Variant report

Variant	rs62317276
Chromosome Location	chr4:130285393-130285394
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12506624	1.00[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs12506696	1.00[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs12510624	0.95[EUR][1000 genomes]
rs1433378	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4540061	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs55792344	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs55875663	0.84[EUR][1000 genomes]
rs56108227	0.84[EUR][1000 genomes]
rs56265309	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs56361313	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs56690775	0.84[EUR][1000 genomes]
rs56982957	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61070104	0.84[EUR][1000 genomes]
rs61455970	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61554187	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62309611	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62309616	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534538	chr4:129799138-130431688	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv830058	chr4:130136025-130315471	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:130284800-130285800	Weak transcription	Dnd41	blood
2	chr4:130284800-130286000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr4:130284800-130292000	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr4:130285000-130289800	Weak transcription	Colon Smooth Muscle	Colon
5	chr4:130285200-130293600	Weak transcription	Fetal Muscle Leg	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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