Variant report

Variant	rs57182662
Chromosome Location	chr4:130248364-130248365
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10031400	0.87[ASN][1000 genomes]
rs12499334	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12505175	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17014612	0.93[EUR][1000 genomes]
rs17014621	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4498146	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4975215	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4975216	0.87[ASN][1000 genomes]
rs55733425	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs55875663	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs56108227	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs56690775	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs59196871	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs59326597	0.85[ASN][1000 genomes]
rs59634627	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61070104	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62317267	0.93[EUR][1000 genomes]
rs67778905	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534538	chr4:129799138-130431688	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv830058	chr4:130136025-130315471	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv879932	chr4:130167642-130264517	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:130246000-130251000	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr4:130247400-130248800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
3	chr4:130247800-130248800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr4:130247800-130248800	Enhancers	Fetal Muscle Leg	muscle
5	chr4:130248000-130248600	Enhancers	Fetal Kidney	kidney
6	chr4:130248000-130248800	Enhancers	Adipose Nuclei	Adipose
7	chr4:130248000-130249000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
8	chr4:130248000-130249000	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr4:130248200-130248600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr4:130248200-130248600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr4:130248200-130248800	Enhancers	Pancreatic Islets	Pancreatic Islet

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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