Variant report

Variant	rs17014744
Chromosome Location	chr1:209726558-209726559
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs12084657	0.82[EUR][1000 genomes]
rs17014768	0.87[CEU][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17014769	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17014810	0.94[CEU][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17014820	0.94[CEU][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17014822	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17014823	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17014830	0.94[CEU][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17014836	0.94[CEU][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17014866	0.85[YRI][hapmap]
rs17388107	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2067744	0.82[EUR][1000 genomes]
rs55688212	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55709381	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55967608	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56025154	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56165413	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58987909	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60686175	0.82[EUR][1000 genomes]
rs61819949	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61822168	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61822169	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61822171	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61822172	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6540543	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6663545	0.85[EUR][1000 genomes]
rs6669549	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6698127	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs742253	0.94[CEU][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7512091	0.87[CEU][hapmap];0.82[EUR][1000 genomes]
rs7516885	0.94[CEU][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7536585	0.88[CEU][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9429996	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999901	chr1:209600631-210205379	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:209720600-209728200	Weak transcription	Esophagus	oesophagus
2	chr1:209725200-209726800	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr1:209725600-209727000	Enhancers	HMEC	breast
4	chr1:209725600-209727200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr1:209725600-209727600	Enhancers	H1 Cell Line	embryonic stem cell
6	chr1:209725800-209726800	Enhancers	NHEK	skin
7	chr1:209725800-209727000	Enhancers	H9 Cell Line	embryonic stem cell
8	chr1:209725800-209727000	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
9	chr1:209725800-209727000	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr1:209725800-209727000	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr1:209725800-209727200	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr1:209726000-209726600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr1:209726000-209727000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
14	chr1:209726000-209727000	Enhancers	HSMM	muscle
15	chr1:209726000-209727200	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr1:209726000-209730000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
17	chr1:209726200-209726600	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr1:209726200-209727000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr1:209726400-209727000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr1:209726400-209727200	Enhancers	iPS-20b Cell Line	embryonic stem cell
21	chr1:209726400-209729000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr1:209726400-209735600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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