Variant report

Variant	rs9429996
Chromosome Location	chr1:209729824-209729825
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs17014744	0.91[ASN][1000 genomes]
rs17014768	0.91[ASN][1000 genomes]
rs17014769	0.91[ASN][1000 genomes]
rs17014810	0.95[ASN][1000 genomes]
rs17014820	0.91[ASN][1000 genomes]
rs17014822	0.91[ASN][1000 genomes]
rs17014823	0.91[ASN][1000 genomes]
rs17388107	0.91[ASN][1000 genomes]
rs55688212	0.91[ASN][1000 genomes]
rs55709381	0.91[ASN][1000 genomes]
rs55967608	0.91[ASN][1000 genomes]
rs56025154	0.91[ASN][1000 genomes]
rs56165413	0.86[ASN][1000 genomes]
rs58987909	0.83[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs61819949	0.91[ASN][1000 genomes]
rs61822168	0.83[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs61822169	0.91[ASN][1000 genomes]
rs61822171	0.91[ASN][1000 genomes]
rs61822172	0.95[ASN][1000 genomes]
rs6540543	0.91[ASN][1000 genomes]
rs6669549	0.91[ASN][1000 genomes]
rs6698127	0.91[ASN][1000 genomes]
rs7536585	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999901	chr1:209600631-210205379	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:209726000-209730000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
2	chr1:209726400-209735600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr1:209726600-209737800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr1:209726800-209738400	Weak transcription	NHEK	skin
5	chr1:209727000-209734000	Weak transcription	HSMM	muscle
6	chr1:209727000-209737600	Weak transcription	HMEC	breast
7	chr1:209727800-209730000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr1:209728600-209738200	Weak transcription	Esophagus	oesophagus
9	chr1:209728800-209730200	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr1:209728800-209730400	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr1:209728800-209730600	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr1:209728800-209730600	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr1:209729000-209730200	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr1:209729000-209730800	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr1:209729200-209730000	Enhancers	H1 Cell Line	embryonic stem cell
16	chr1:209729200-209730000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr1:209729200-209730400	Enhancers	ES-I3 Cell Line	embryonic stem cell
18	chr1:209729400-209730200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr1:209729400-209734200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr1:209729600-209730200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
21	chr1:209729600-209730200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr1:209729800-209733800	Weak transcription	Fetal Kidney	kidney

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