Variant report

Variant	rs17014906
Chromosome Location	chr1:209793471-209793472
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr1:209793165-209793644	Hela-S3	cervix:	n/a	n/a
2	POLR2A	chr1:209789528-209798172	Hela-S3	cervix:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:209793195..209794900-chr1:209798885..209800894,2	K562	blood:

Variant related genes	Relation type
LAMB3	TF binding region

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10489340	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12073223	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12089972	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12090288	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12403733	1.00[CEU][hapmap];0.95[GIH][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12410975	1.00[CEU][hapmap];0.90[GIH][hapmap]
rs17014889	1.00[CEU][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17014942	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17014955	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17015006	1.00[MEX][hapmap];0.82[AMR][1000 genomes]
rs2072937	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2072939	1.00[CEU][hapmap];0.95[GIH][hapmap];0.82[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2072942	0.95[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2076219	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2076222	1.00[CEU][hapmap];0.95[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2076232	1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2076347	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2076348	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2076349	1.00[CEU][hapmap];1.00[GIH][hapmap];0.82[EUR][1000 genomes]
rs2076350	0.82[EUR][1000 genomes]
rs2076352	1.00[CEU][hapmap];1.00[GIH][hapmap];0.82[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2229465	1.00[CEU][hapmap];1.00[GIH][hapmap];0.82[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2229466	1.00[CEU][hapmap];0.87[GIH][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2235542	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.95[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2236889	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2236890	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2282734	0.95[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2282736	0.95[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2282737	0.95[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs36051870	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs58679997	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59815577	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60927005	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs714971	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999901	chr1:209600631-210205379	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
2	nsv1014034	chr1:209759648-210501731	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:209777800-209796600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr1:209781600-209793600	Weak transcription	Esophagus	oesophagus
3	chr1:209781600-209793600	Weak transcription	Fetal Lung	lung
4	chr1:209785800-209793600	Strong transcription	Fetal Stomach	stomach
5	chr1:209786200-209796200	Strong transcription	HMEC	breast
6	chr1:209786400-209796200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr1:209786600-209794600	Weak transcription	Pancreas	Pancrea
8	chr1:209786800-209800000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr1:209787200-209795000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr1:209787200-209808400	Strong transcription	Placenta Amnion	Placenta Amnion
11	chr1:209787400-209816200	Strong transcription	NHEK	skin
12	chr1:209788000-209793800	Weak transcription	Small Intestine	intestine
13	chr1:209788400-209796000	Enhancers	Psoas Muscle	Psoas
14	chr1:209789000-209802800	Strong transcription	Hela-S3	cervix
15	chr1:209789200-209794800	Enhancers	Placenta	Placenta
16	chr1:209789200-209795400	Enhancers	Skeletal Muscle Female	skeletal muscle
17	chr1:209789200-209795800	Enhancers	Right Atrium	heart
18	chr1:209790200-209797800	Enhancers	Brain Germinal Matrix	brain
19	chr1:209790400-209796000	Enhancers	Right Ventricle	heart
20	chr1:209791200-209795600	Enhancers	HSMMtube	muscle
21	chr1:209791400-209793600	Enhancers	Brain Hippocampus Middle	brain
22	chr1:209791400-209793800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr1:209791400-209793800	Enhancers	Brain Angular Gyrus	brain
24	chr1:209791400-209794400	Genic enhancers	Duodenum Mucosa	Duodenum
25	chr1:209791600-209795000	Enhancers	Cortex derived primary cultured neurospheres	brain
26	chr1:209791600-209796000	Genic enhancers	Rectal Mucosa Donor 31	rectum
27	chr1:209791800-209794000	Enhancers	Brain Substantia Nigra	brain
28	chr1:209791800-209794800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr1:209791800-209794800	Enhancers	Fetal Brain Male	brain
30	chr1:209791800-209795800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
31	chr1:209791800-209796000	Enhancers	Muscle Satellite Cultured Cells	--
32	chr1:209791800-209801400	Enhancers	Fetal Muscle Leg	muscle
33	chr1:209792000-209793600	Enhancers	Skeletal Muscle Male	skeletal muscle
34	chr1:209792000-209794200	Enhancers	Stomach Mucosa	stomach
35	chr1:209792000-209797000	Genic enhancers	Fetal Intestine Large	intestine
36	chr1:209792000-209797600	Genic enhancers	Fetal Intestine Small	intestine
37	chr1:209792200-209794000	Enhancers	Brain Inferior Temporal Lobe	brain
38	chr1:209792200-209794000	Enhancers	HSMM	muscle
39	chr1:209792200-209795000	Enhancers	Fetal Muscle Trunk	muscle
40	chr1:209792200-209795800	Enhancers	Adipose Nuclei	Adipose
41	chr1:209792400-209793600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr1:209792400-209793600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr1:209792400-209793600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
44	chr1:209792400-209793600	Weak transcription	Spleen	Spleen
45	chr1:209792400-209794200	Weak transcription	Colonic Mucosa	Colon
46	chr1:209792400-209798400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr1:209792400-209806400	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
48	chr1:209792600-209793600	Weak transcription	Fetal Brain Female	brain
49	chr1:209792600-209794200	Strong transcription	Liver	Liver
50	chr1:209792800-209793800	Weak transcription	Osteobl	bone

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