The 2.0 version of rSNPBase

Variant report

Variant rs58679997
Chromosome Location chr1:209807094-209807095
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:47 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:209787200-209808400 Strong transcription Placenta Amnion Placenta Amnion
2 chr1:209787400-209816200 Strong transcription NHEK skin
3 chr1:209799800-209814600 Strong transcription Fetal Intestine Small intestine
4 chr1:209800000-209813200 Strong transcription Fetal Intestine Large intestine
5 chr1:209801200-209811600 Weak transcription Stomach Mucosa stomach
6 chr1:209801200-209814800 Weak transcription Rectal Smooth Muscle rectum
7 chr1:209801400-209812800 Weak transcription Pancreas Pancrea
8 chr1:209801400-209814800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
9 chr1:209801600-209807600 Weak transcription Colonic Mucosa Colon
10 chr1:209801600-209808200 Weak transcription Fetal Lung lung
11 chr1:209801600-209814600 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
12 chr1:209801600-209818000 Weak transcription Spleen Spleen
13 chr1:209801600-209819800 Weak transcription Lung lung
14 chr1:209801800-209812000 Strong transcription Rectal Mucosa Donor 31 rectum
15 chr1:209803200-209807800 Strong transcription Rectal Mucosa Donor 29 rectum
16 chr1:209803600-209813200 Strong transcription Hela-S3 cervix
17 chr1:209804400-209816600 Weak transcription Small Intestine intestine
18 chr1:209805200-209808000 Genic enhancers HMEC breast
19 chr1:209805200-209809600 Weak transcription Psoas Muscle Psoas
20 chr1:209805200-209814600 Weak transcription Adipose Nuclei Adipose
21 chr1:209805400-209807400 Strong transcription Sigmoid Colon Sigmoid Colon
22 chr1:209805400-209809600 Weak transcription Right Atrium heart
23 chr1:209805400-209814600 Weak transcription Fetal Adrenal Gland Adrenal Gland
24 chr1:209805400-209814600 Weak transcription Right Ventricle heart
25 chr1:209805400-209816200 Weak transcription Esophagus oesophagus
26 chr1:209805600-209808000 Weak transcription Fetal Heart heart
27 chr1:209805600-209809600 Weak transcription Skeletal Muscle Female skeletal muscle
28 chr1:209805600-209809800 Weak transcription Left Ventricle heart
29 chr1:209805800-209809400 Weak transcription Skeletal Muscle Male skeletal muscle
30 chr1:209806200-209807800 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
31 chr1:209806200-209808600 Enhancers Primary neutrophils fromperipheralblood blood
32 chr1:209806200-209813200 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
33 chr1:209806400-209807200 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
34 chr1:209806400-209807200 Enhancers Muscle Satellite Cultured Cells --
35 chr1:209806400-209807400 Enhancers HSMM muscle
36 chr1:209806400-209807600 Strong transcription Breast Myoepithelial Primary Cells Breast
37 chr1:209806400-209807600 Weak transcription Gastric stomach
38 chr1:209806600-209807200 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
39 chr1:209806600-209807800 Enhancers NH-A brain
40 chr1:209806600-209807800 Enhancers Osteobl bone
41 chr1:209806800-209809800 Weak transcription Duodenum Mucosa Duodenum
42 chr1:209807000-209807600 Enhancers GM12878-XiMat blood
43 chr1:209807000-209808000 Enhancers H1 Derived Mesenchymal Stem Cells ES cell derived
44 chr1:209807000-209808000 Strong transcription Fetal Stomach stomach
45 chr1:209807000-209808000 Enhancers Monocytes-CD14+_RO01746 blood
46 chr1:209807000-209808400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
47 chr1:209807000-209808400 Genic enhancers Foreskin Keratinocyte Primary Cells skin02 Skin

Quick Search:


  
Input of quick search could be:

what's new

Quick links

Copyright © 2015, Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences. All Rights Reserved Feedback
Last update: Aug 31, 2015