Variant report

Variant	rs17016097
Chromosome Location	chr4:143338197-143338198
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:143333597..143335971-chr4:143337267..143338808,2	MCF-7	breast:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10519654	0.82[YRI][hapmap];1.00[AMR][1000 genomes]
rs10519658	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1489579	1.00[AMR][1000 genomes]
rs16998546	1.00[AMR][1000 genomes]
rs17016047	0.91[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17016073	0.90[YRI][hapmap];0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28361347	1.00[AMR][1000 genomes]
rs28552507	1.00[AMR][1000 genomes]
rs55734648	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55924247	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58466279	1.00[AMR][1000 genomes]
rs59339281	1.00[AMR][1000 genomes]
rs60408738	1.00[AMR][1000 genomes]
rs61368063	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61643803	1.00[AMR][1000 genomes]
rs6845221	0.82[YRI][hapmap];1.00[AMR][1000 genomes]
rs72941201	1.00[AMR][1000 genomes]
rs72944962	1.00[AMR][1000 genomes]
rs72944976	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498005	chr4:142515689-143502988	Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv830100	chr4:143216951-143393305	Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:143329000-143338200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr4:143329000-143350000	Weak transcription	Primary hematopoietic stem cells	blood
3	chr4:143330200-143344800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr4:143334800-143339200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr4:143336000-143338400	Weak transcription	Left Ventricle	heart
6	chr4:143336000-143341000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr4:143336200-143340800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr4:143336400-143338200	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr4:143337000-143339000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr4:143337000-143339400	Enhancers	HMEC	breast
11	chr4:143337400-143338200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr4:143337400-143338200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr4:143337400-143338200	Enhancers	Small Intestine	intestine
14	chr4:143337400-143338400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
15	chr4:143337400-143338400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
16	chr4:143337400-143338400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr4:143337400-143338400	Enhancers	HSMM	muscle
18	chr4:143337400-143338400	Enhancers	NH-A	brain
19	chr4:143337400-143338400	Enhancers	NHDF-Ad	bronchial
20	chr4:143337400-143338600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr4:143337400-143338600	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
22	chr4:143337400-143338600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
23	chr4:143337400-143338600	Enhancers	Muscle Satellite Cultured Cells	--
24	chr4:143337400-143339000	Enhancers	Dnd41	blood
25	chr4:143337400-143339200	Enhancers	NHEK	skin
26	chr4:143337600-143338400	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
27	chr4:143337600-143338400	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
28	chr4:143337600-143338600	Enhancers	Osteobl	bone
29	chr4:143337800-143338200	Enhancers	HUES6 Cell Line	embryonic stem cell
30	chr4:143337800-143338200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr4:143337800-143338200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr4:143337800-143338200	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
33	chr4:143337800-143338200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr4:143337800-143338200	Flanking Active TSS	HUVEC	blood vessel
35	chr4:143337800-143338400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr4:143337800-143338400	Flanking Active TSS	Primary T cells fromperipheralblood	blood
37	chr4:143337800-143338400	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
38	chr4:143337800-143338400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr4:143337800-143338600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
40	chr4:143337800-143338600	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
41	chr4:143338000-143338200	Enhancers	ES-I3 Cell Line	embryonic stem cell
42	chr4:143338000-143338200	Enhancers	HUES48 Cell Line	embryonic stem cell
43	chr4:143338000-143338200	Enhancers	iPS-18 Cell Line	embryonic stem cell
44	chr4:143338000-143338200	Enhancers	HSMMtube	muscle
45	chr4:143338000-143338400	Flanking Active TSS	Primary T cells from cord blood	blood
46	chr4:143338000-143338400	Enhancers	Fetal Lung	lung
47	chr4:143338000-143338600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
48	chr4:143338000-143338600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
49	chr4:143338000-143338600	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
50	chr4:143338000-143338600	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin

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