Variant report

Variant	rs72941201
Chromosome Location	chr4:143306641-143306642
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10519654	1.00[AMR][1000 genomes]
rs10519658	1.00[AMR][1000 genomes]
rs1489579	1.00[AMR][1000 genomes]
rs16998546	1.00[AMR][1000 genomes]
rs17016047	1.00[AMR][1000 genomes]
rs17016073	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17016097	1.00[AMR][1000 genomes]
rs28361347	1.00[AMR][1000 genomes]
rs28552507	1.00[AMR][1000 genomes]
rs55734648	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55924247	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58466279	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59339281	1.00[AMR][1000 genomes]
rs60408738	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61368063	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61643803	1.00[AMR][1000 genomes]
rs6845221	1.00[AMR][1000 genomes]
rs72944962	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72944976	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498005	chr4:142515689-143502988	Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv830100	chr4:143216951-143393305	Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:143290400-143322000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr4:143296600-143310200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr4:143300200-143326200	Weak transcription	Aorta	Aorta
4	chr4:143301200-143308600	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr4:143301200-143326200	Weak transcription	Gastric	stomach
6	chr4:143301400-143308000	Weak transcription	Fetal Muscle Leg	muscle
7	chr4:143301400-143316200	Weak transcription	Dnd41	blood
8	chr4:143301600-143308000	Weak transcription	Primary T cells fromperipheralblood	blood
9	chr4:143301600-143308200	Weak transcription	Osteobl	bone
10	chr4:143301600-143312400	Weak transcription	Psoas Muscle	Psoas
11	chr4:143301600-143317400	Weak transcription	NH-A	brain
12	chr4:143301600-143322800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr4:143301600-143323200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr4:143301600-143325400	Weak transcription	Left Ventricle	heart
15	chr4:143301800-143309600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr4:143302200-143315000	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr4:143302200-143316400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr4:143302200-143323000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr4:143304400-143307800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
20	chr4:143305200-143307000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
21	chr4:143305200-143307800	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr4:143305200-143321200	Weak transcription	HSMMtube	muscle
23	chr4:143305400-143308600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
24	chr4:143305400-143308800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
25	chr4:143305400-143311400	Weak transcription	Small Intestine	intestine
26	chr4:143305600-143307600	Weak transcription	HSMM	muscle
27	chr4:143305600-143308200	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr4:143305800-143307000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
29	chr4:143305800-143313800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr4:143306000-143307600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr4:143306000-143308800	Weak transcription	Primary T cells from cord blood	blood
32	chr4:143306000-143314800	Weak transcription	NHEK	skin
33	chr4:143306200-143306800	Enhancers	Primary T helper cells fromperipheralblood	blood
34	chr4:143306200-143306800	Strong transcription	HMEC	breast
35	chr4:143306200-143307800	Genic enhancers	Primary T helper cells PMA-I stimulated	--
36	chr4:143306200-143308000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
37	chr4:143306400-143307200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
38	chr4:143306400-143307200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr4:143306400-143308000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr4:143306600-143307200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
41	chr4:143306600-143307600	Enhancers	Primary T helper naive cells from peripheral blood	blood
42	chr4:143306600-143320800	Weak transcription	Primary hematopoietic stem cells	blood

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