Variant report

Variant	rs17016358
Chromosome Location	chr3:25428328-25428329
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1159899	0.83[ASN][1000 genomes]
rs11921615	1.00[ASN][1000 genomes]
rs17016385	1.00[ASN][1000 genomes]
rs2306624	0.83[ASN][1000 genomes]
rs6550969	1.00[ASN][1000 genomes]
rs6550970	1.00[ASN][1000 genomes]
rs6768396	0.83[ASN][1000 genomes]
rs6799176	1.00[ASN][1000 genomes]
rs6802733	1.00[ASN][1000 genomes]
rs716161	1.00[ASN][1000 genomes]
rs7618590	0.83[ASN][1000 genomes]
rs7627850	0.83[ASN][1000 genomes]
rs7628351	0.83[ASN][1000 genomes]
rs7628541	0.83[ASN][1000 genomes]
rs9839276	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949035	chr3:25194301-26084890	Weak transcription Bivalent/Poised TSS Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	68 gene(s)	inside rSNPs	diseases
2	nsv834645	chr3:25363723-25555107	Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:25427000-25428400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:25427400-25428400	Enhancers	Fetal Kidney	kidney
3	chr3:25427400-25429200	Enhancers	Fetal Muscle Leg	muscle
4	chr3:25427800-25429000	Weak transcription	Brain Anterior Caudate	brain
5	chr3:25428200-25428600	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr3:25428200-25428800	Enhancers	NHDF-Ad	bronchial
7	chr3:25428200-25429000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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