Variant report

Variant	rs6768396
Chromosome Location	chr3:25421707-25421708
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1159899	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11921615	0.83[ASN][1000 genomes]
rs17016358	0.83[ASN][1000 genomes]
rs17016385	0.83[ASN][1000 genomes]
rs1864911	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2306624	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2363597	0.83[EUR][1000 genomes]
rs4681053	0.87[AFR][1000 genomes]
rs58538437	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6550969	0.83[ASN][1000 genomes]
rs6550970	0.83[ASN][1000 genomes]
rs6799176	0.83[ASN][1000 genomes]
rs6802733	0.83[ASN][1000 genomes]
rs716161	0.83[ASN][1000 genomes]
rs7618590	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7627850	1.00[ASN][1000 genomes]
rs7628351	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7628541	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9839276	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949035	chr3:25194301-26084890	Weak transcription Bivalent/Poised TSS Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	68 gene(s)	inside rSNPs	diseases
2	nsv834645	chr3:25363723-25555107	Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:25418400-25427000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:25420600-25423000	Enhancers	Fetal Intestine Large	intestine
3	chr3:25421000-25422600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr3:25421200-25422200	Weak transcription	Fetal Intestine Small	intestine
5	chr3:25421400-25422800	Enhancers	Fetal Lung	lung
6	chr3:25421600-25422000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr3:25421600-25422000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr3:25421600-25422000	Enhancers	Placenta	Placenta
9	chr3:25421600-25422000	Enhancers	Lung	lung
10	chr3:25421600-25422000	Enhancers	Spleen	Spleen
11	chr3:25421600-25422000	Enhancers	Osteobl	bone
12	chr3:25421600-25423000	Enhancers	Fetal Kidney	kidney
13	chr3:25421600-25423000	Enhancers	NHDF-Ad	bronchial

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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