Variant report

Variant	rs58538437
Chromosome Location	chr3:25418506-25418507
allele	-/TTTT
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1159899	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1864911	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2306624	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2363597	0.84[EUR][1000 genomes]
rs4681053	1.00[ASN][1000 genomes]
rs6768396	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7618590	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7622538	1.00[ASN][1000 genomes]
rs9839276	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949035	chr3:25194301-26084890	Weak transcription Bivalent/Poised TSS Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	68 gene(s)	inside rSNPs	diseases
2	nsv834645	chr3:25363723-25555107	Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:25416000-25420200	Enhancers	Fetal Intestine Large	intestine
2	chr3:25417600-25421200	Enhancers	Fetal Intestine Small	intestine
3	chr3:25418400-25427000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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