Variant report

Variant	rs17017569
Chromosome Location	chr1:211664896-211664897
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11806169	1.00[CHB][hapmap]
rs17017668	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs17189035	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[GIH][hapmap];0.85[JPT][hapmap];1.00[MEX][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17695731	0.85[TSI][hapmap]
rs2120671	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs2166104	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs41309617	1.00[AMR][1000 genomes]
rs61849030	1.00[AMR][1000 genomes]
rs894988	0.80[ASN][1000 genomes]
rs894989	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832514	chr1:211630247-211794963	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211648000-211665600	Weak transcription	Right Atrium	heart
2	chr1:211659200-211666800	Weak transcription	Fetal Heart	heart
3	chr1:211659200-211687600	Weak transcription	Spleen	Spleen
4	chr1:211663000-211666200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr1:211663000-211667600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr1:211663600-211665000	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr1:211663600-211666400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr1:211663800-211665800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr1:211664000-211665600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr1:211664200-211666200	Bivalent Enhancer	K562	blood
11	chr1:211664200-211666800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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