Variant report

Variant	rs17189035
Chromosome Location	chr1:211657371-211657372
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:211653426..211655155-chr1:211655714..211658507,2	K562	blood:
2	chr1:211649424..211652374-chr1:211654893..211658184,3	K562	blood:
3	chr1:211643117..211644840-chr1:211656331..211659114,2	K562	blood:
4	chr1:211656956..211658686-chr1:211707478..211709972,2	K562	blood:
5	chr1:211656405..211659421-chr1:211661740..211666279,5	K562	blood:
6	chr1:211656913..211659183-chr1:211661740..211664664,3	K562	blood:
7	chr1:211656368..211658461-chr1:211818304..211819839,2	K562	blood:

No data

No data

No data

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11806169	1.00[CHB][hapmap]
rs17017569	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[GIH][hapmap];0.85[JPT][hapmap];1.00[MEX][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17017668	1.00[CHB][hapmap]
rs2120671	1.00[CHB][hapmap]
rs2166104	1.00[CHB][hapmap]
rs41309617	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61849030	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832514	chr1:211630247-211794963	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211647800-211664600	Weak transcription	Gastric	stomach
2	chr1:211648000-211665600	Weak transcription	Right Atrium	heart
3	chr1:211654600-211657400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr1:211655800-211659400	Enhancers	Fetal Muscle Leg	muscle
5	chr1:211656000-211659000	Enhancers	HSMMtube	muscle
6	chr1:211656200-211657600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr1:211656200-211658200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr1:211656600-211657600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr1:211657000-211663000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr1:211657200-211658600	Bivalent Enhancer	Fetal Muscle Trunk	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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