Variant report

Variant	rs17017603
Chromosome Location	chr4:144241508-144241509
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs17017607	1.00[AFR][1000 genomes]
rs17017619	1.00[AFR][1000 genomes]
rs17017677	1.00[AFR][1000 genomes]
rs17017732	1.00[AFR][1000 genomes]
rs17017740	1.00[AFR][1000 genomes]
rs28989209	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033902	chr4:144114413-144285772	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	esv3332574	chr4:144239396-144259577	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	n/a
3	nsv1026110	chr4:144239825-144292148	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:144235000-144247000	Weak transcription	Right Atrium	heart
2	chr4:144240200-144242800	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr4:144240400-144242200	Enhancers	Fetal Heart	heart
4	chr4:144240600-144241600	Enhancers	Brain Cingulate Gyrus	brain
5	chr4:144240800-144241600	Enhancers	Stomach Mucosa	stomach
6	chr4:144240800-144241800	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr4:144241000-144241600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr4:144241000-144241600	Enhancers	Left Ventricle	heart
9	chr4:144241000-144242400	Enhancers	Rectal Mucosa Donor 31	rectum
10	chr4:144241200-144241600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr4:144241200-144241800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr4:144241400-144241600	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr4:144241400-144241600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr4:144241400-144241600	Enhancers	Brain Substantia Nigra	brain
15	chr4:144241400-144242000	Active TSS	Brain Inferior Temporal Lobe	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links