Variant report

Variant	rs17017672
Chromosome Location	chr1:211695974-211695975
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1020335	0.85[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10863909	0.85[JPT][hapmap]
rs2184855	0.85[CEU][hapmap];0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4287239	0.85[JPT][hapmap]
rs4951761	0.85[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4951763	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs6664769	0.92[ASN][1000 genomes]
rs6693000	1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs753646	0.85[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832514	chr1:211630247-211794963	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211688200-211701200	Weak transcription	Gastric	stomach
2	chr1:211689400-211701200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr1:211689400-211715000	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr1:211690200-211698400	Enhancers	Liver	Liver
5	chr1:211691000-211700400	Weak transcription	Fetal Thymus	thymus
6	chr1:211693400-211697800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr1:211694800-211696200	Enhancers	GM12878-XiMat	blood
8	chr1:211694800-211698000	Weak transcription	Fetal Muscle Leg	muscle
9	chr1:211695000-211697400	Weak transcription	K562	blood
10	chr1:211695000-211697800	Weak transcription	Fetal Muscle Trunk	muscle
11	chr1:211695000-211698400	Enhancers	HepG2	liver
12	chr1:211695200-211701200	Weak transcription	Right Atrium	heart
13	chr1:211695600-211696200	Enhancers	A549	lung
14	chr1:211695800-211696000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr1:211695800-211696200	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr1:211695800-211696200	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr1:211695800-211696400	Enhancers	ES-I3 Cell Line	embryonic stem cell
18	chr1:211695800-211696400	Enhancers	iPS-20b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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