Variant report

Variant	rs6664769
Chromosome Location	chr1:211698153-211698154
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:211692018..211701005-chr1:211746984..211755135,17	MCF-7	breast:
2	chr1:211697121..211699374-chr1:211746833..211748555,2	K562	blood:
3	chr1:211692714..211696685-chr1:211696869..211699786,3	K562	blood:

Variant related genes	Relation type
ENSG00000170385	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1020335	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10863915	0.83[AMR][1000 genomes]
rs11119758	0.83[AMR][1000 genomes]
rs17017672	0.92[ASN][1000 genomes]
rs1962917	0.83[AMR][1000 genomes]
rs1962918	0.83[AMR][1000 genomes]
rs2010504	0.83[AMR][1000 genomes]
rs2032005	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2184855	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4951761	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4951762	0.83[AMR][1000 genomes]
rs4951763	0.80[EUR][1000 genomes]
rs6693000	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7519203	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832514	chr1:211630247-211794963	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211688200-211701200	Weak transcription	Gastric	stomach
2	chr1:211689400-211701200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr1:211689400-211715000	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr1:211690200-211698400	Enhancers	Liver	Liver
5	chr1:211691000-211700400	Weak transcription	Fetal Thymus	thymus
6	chr1:211695000-211698400	Enhancers	HepG2	liver
7	chr1:211695200-211701200	Weak transcription	Right Atrium	heart
8	chr1:211696200-211699200	Weak transcription	GM12878-XiMat	blood
9	chr1:211696400-211700400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr1:211696800-211699000	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr1:211696800-211699000	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr1:211697400-211699200	Enhancers	K562	blood
13	chr1:211697600-211698400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr1:211697800-211698400	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr1:211697800-211698400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr1:211697800-211698400	Enhancers	Fetal Muscle Trunk	muscle
17	chr1:211697800-211698600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr1:211697800-211699200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr1:211698000-211698200	Enhancers	Esophagus	oesophagus
20	chr1:211698000-211698600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr1:211698000-211698800	Enhancers	Fetal Muscle Leg	muscle
22	chr1:211698000-211699400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr1:211698000-211700200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr1:211698000-211700200	Weak transcription	Spleen	Spleen
25	chr1:211698000-211700400	Weak transcription	Adipose Nuclei	Adipose
26	chr1:211698000-211700600	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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