Variant report

Variant	rs2032005
Chromosome Location	chr1:211697486-211697487
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10863915	1.00[JPT][hapmap];0.92[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11119758	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.87[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1962917	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1962918	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2010504	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4951528	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4951758	0.84[AFR][1000 genomes]
rs4951762	1.00[CHB][hapmap];0.89[JPT][hapmap];0.88[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6664769	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6680424	0.83[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs7519203	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832514	chr1:211630247-211794963	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211688200-211701200	Weak transcription	Gastric	stomach
2	chr1:211689400-211701200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr1:211689400-211715000	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr1:211690200-211698400	Enhancers	Liver	Liver
5	chr1:211691000-211700400	Weak transcription	Fetal Thymus	thymus
6	chr1:211693400-211697800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr1:211694800-211698000	Weak transcription	Fetal Muscle Leg	muscle
8	chr1:211695000-211697800	Weak transcription	Fetal Muscle Trunk	muscle
9	chr1:211695000-211698400	Enhancers	HepG2	liver
10	chr1:211695200-211701200	Weak transcription	Right Atrium	heart
11	chr1:211696200-211699200	Weak transcription	GM12878-XiMat	blood
12	chr1:211696400-211697800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr1:211696400-211700400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr1:211696800-211697800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr1:211696800-211699000	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr1:211696800-211699000	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr1:211697400-211699200	Enhancers	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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