Variant report

Variant	rs17017826
Chromosome Location	chr4:91843403-91843404
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11721809	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs11728122	0.85[CHB][hapmap]
rs11733401	0.85[CHB][hapmap]
rs11736428	0.85[CHB][hapmap]
rs1461600	0.85[CHB][hapmap]
rs17017819	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs17017831	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17017835	0.84[CHB][hapmap]
rs17017876	0.85[CHB][hapmap]
rs17017921	0.85[CHB][hapmap]
rs17017923	0.85[CHB][hapmap]
rs17017924	0.85[CHB][hapmap]
rs1903495	0.85[CHB][hapmap]
rs57447317	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6819979	0.85[CHB][hapmap]
rs73834578	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879553	chr4:91691313-91868576	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv879555	chr4:91743538-91967602	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv491945	chr4:91753638-92240582	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	esv2755332	chr4:91782522-91869222	Enhancers Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv10533	chr4:91842776-91935992	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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