Variant report

Variant	rs1461600
Chromosome Location	chr4:91914972-91914973
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:91905983..91908591-chr4:91914277..91915974,2	MCF-7	breast:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11721809	0.85[CHB][hapmap]
rs11724350	1.00[ASN][1000 genomes]
rs11725835	1.00[ASN][1000 genomes]
rs11727332	0.92[ASN][1000 genomes]
rs11728122	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11728310	0.92[ASN][1000 genomes]
rs11733401	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11735166	1.00[ASN][1000 genomes]
rs11736428	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11932231	1.00[ASN][1000 genomes]
rs17017819	0.85[CHB][hapmap]
rs17017826	0.85[CHB][hapmap]
rs17017835	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17017846	1.00[TSI][hapmap]
rs17017876	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs17017921	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs17017923	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap]
rs17017924	1.00[CHB][hapmap]
rs1903495	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs58387923	0.92[ASN][1000 genomes]
rs6819979	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6833255	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72882875	1.00[EUR][1000 genomes]
rs72882879	1.00[EUR][1000 genomes]
rs72882881	1.00[EUR][1000 genomes]
rs72882890	1.00[EUR][1000 genomes]
rs72884736	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73834710	1.00[ASN][1000 genomes]
rs73834723	0.96[ASN][1000 genomes]
rs73834724	0.96[ASN][1000 genomes]
rs73834738	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879555	chr4:91743538-91967602	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv491945	chr4:91753638-92240582	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv10533	chr4:91842776-91935992	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv998409	chr4:91888883-91915429	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv879556	chr4:91889469-91941029	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv879557	chr4:91903868-91954105	ZNF genes & repeats Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv1005674	chr4:91908118-91924377	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv4423	chr4:91908999-91953040	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv461582	chr4:91910883-91925784	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv594835	chr4:91910883-91925784	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv879558	chr4:91911743-91948999	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv437404	chr4:91914415-91941029	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv594836	chr4:91914972-91942194	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:91912000-91915800	Weak transcription	Fetal Heart	heart

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