Variant report

Variant	rs11724350
Chromosome Location	chr4:91880440-91880441
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11725835	1.00[ASN][1000 genomes]
rs11727332	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11728122	1.00[ASN][1000 genomes]
rs11728310	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11735166	1.00[ASN][1000 genomes]
rs11932231	1.00[ASN][1000 genomes]
rs1461600	1.00[ASN][1000 genomes]
rs57334654	0.96[AFR][1000 genomes]
rs58387923	0.92[ASN][1000 genomes]
rs6833255	0.89[ASN][1000 genomes]
rs72884736	1.00[ASN][1000 genomes]
rs73834710	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73834723	0.96[ASN][1000 genomes]
rs73834724	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879555	chr4:91743538-91967602	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv491945	chr4:91753638-92240582	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv10533	chr4:91842776-91935992	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:91872200-91885600	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr4:91879000-91880600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr4:91879000-91881200	Enhancers	Hela-S3	cervix
4	chr4:91879200-91880600	Enhancers	A549	lung
5	chr4:91880000-91880800	Weak transcription	Fetal Intestine Small	intestine
6	chr4:91880200-91880600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr4:91880200-91880600	Weak transcription	Fetal Intestine Large	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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