Variant report

Variant	rs11728310
Chromosome Location	chr4:91871536-91871537
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11724350	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11725835	0.92[ASN][1000 genomes]
rs11727332	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11728122	0.92[ASN][1000 genomes]
rs11730640	0.81[ASN][1000 genomes]
rs11730705	0.81[ASN][1000 genomes]
rs11735166	0.92[ASN][1000 genomes]
rs11932231	0.92[ASN][1000 genomes]
rs1461600	0.92[ASN][1000 genomes]
rs57334654	0.92[AFR][1000 genomes]
rs58387923	1.00[ASN][1000 genomes]
rs6833255	0.81[ASN][1000 genomes]
rs72884736	0.92[ASN][1000 genomes]
rs73834710	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs73834723	0.89[ASN][1000 genomes]
rs73834724	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879555	chr4:91743538-91967602	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv491945	chr4:91753638-92240582	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv10533	chr4:91842776-91935992	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv594834	chr4:91866171-91872431	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:91871000-91872200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr4:91871000-91872200	Enhancers	Fetal Intestine Large	intestine
3	chr4:91871000-91872200	Enhancers	Fetal Intestine Small	intestine
4	chr4:91871200-91871600	Enhancers	Pancreatic Islets	Pancreatic Islet
5	chr4:91871200-91872000	Flanking Active TSS	Hela-S3	cervix
6	chr4:91871400-91871600	Active TSS	A549	lung
7	chr4:91871400-91871800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr4:91871400-91872000	Enhancers	Fetal Heart	heart
9	chr4:91871400-91872600	Flanking Active TSS	HUVEC	blood vessel

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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