Variant report

Variant	rs17018690
Chromosome Location	chr2:36621057-36621058
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:36595497..36597494-chr2:36620242..36622925,2	MCF-7	breast:
2	chr2:36613783..36616310-chr2:36620739..36623500,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000150938	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1465335	0.95[CHB][hapmap];0.90[ASN][1000 genomes]
rs3770929	0.95[CHB][hapmap];0.86[ASN][1000 genomes]
rs3821163	0.87[CEU][hapmap];1.00[CHB][hapmap];0.84[GIH][hapmap];0.84[JPT][hapmap];0.94[ASN][1000 genomes]
rs6544009	1.00[CEU][hapmap];0.82[CHB][hapmap];0.83[GIH][hapmap];0.90[JPT][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833803	chr2:36589065-36745779	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:36586200-36626600	Weak transcription	Primary B cells from cord blood	blood
2	chr2:36604400-36640400	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr2:36604400-36640600	Weak transcription	Brain Cingulate Gyrus	brain
4	chr2:36611600-36632400	Weak transcription	Esophagus	oesophagus
5	chr2:36611600-36635400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr2:36613000-36624000	Weak transcription	Small Intestine	intestine
7	chr2:36614800-36621400	Weak transcription	Stomach Mucosa	stomach
8	chr2:36616800-36624200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr2:36616800-36631200	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr2:36616800-36635000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr2:36617000-36633400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr2:36617200-36622200	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr2:36617200-36623800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr2:36617200-36624000	Weak transcription	Fetal Intestine Large	intestine
15	chr2:36617200-36624000	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr2:36617200-36625000	Weak transcription	Fetal Intestine Small	intestine
17	chr2:36617200-36630800	Weak transcription	Rectal Smooth Muscle	rectum
18	chr2:36617200-36631200	Weak transcription	Fetal Kidney	kidney
19	chr2:36617200-36633800	Weak transcription	Fetal Lung	lung
20	chr2:36617600-36621400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr2:36617600-36624000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr2:36617800-36630600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr2:36617800-36630600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr2:36618200-36624000	Weak transcription	Primary hematopoietic stem cells	blood
25	chr2:36618600-36643000	Genic enhancers	Osteobl	bone
26	chr2:36618800-36621200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
27	chr2:36619200-36621600	Enhancers	HUES48 Cell Line	embryonic stem cell
28	chr2:36619400-36621200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr2:36619400-36621600	Enhancers	HUES64 Cell Line	embryonic stem cell
30	chr2:36619600-36621200	Genic enhancers	HSMM	muscle
31	chr2:36619600-36621200	Genic enhancers	NHEK	skin
32	chr2:36619600-36621600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
33	chr2:36619600-36621800	Enhancers	HUES6 Cell Line	embryonic stem cell
34	chr2:36619600-36622600	Enhancers	iPS-18 Cell Line	embryonic stem cell
35	chr2:36619600-36622800	Enhancers	ES-I3 Cell Line	embryonic stem cell
36	chr2:36619800-36621200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
37	chr2:36619800-36621200	Enhancers	H9 Cell Line	embryonic stem cell
38	chr2:36619800-36621200	Genic enhancers	HUVEC	blood vessel
39	chr2:36619800-36621400	Enhancers	iPS-20b Cell Line	embryonic stem cell
40	chr2:36619800-36625400	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr2:36620000-36621200	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr2:36620000-36621200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr2:36620000-36621200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr2:36620000-36621200	Enhancers	Duodenum Smooth Muscle	Duodenum
45	chr2:36620000-36621200	Genic enhancers	Placenta	Placenta
46	chr2:36620000-36621200	Enhancers	Psoas Muscle	Psoas
47	chr2:36620000-36621200	Genic enhancers	NH-A	brain
48	chr2:36620000-36621400	Enhancers	H1 Cell Line	embryonic stem cell
49	chr2:36620000-36621400	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr2:36620000-36621400	Enhancers	Skeletal Muscle Female	skeletal muscle

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