Variant report

Variant	rs6544009
Chromosome Location	chr2:36614197-36614198
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:36612565..36614901-chr2:36618563..36620425,2	K562	blood:
2	chr2:36613783..36616310-chr2:36620739..36623500,2	MCF-7	breast:
3	chr2:36604191..36607049-chr2:36612212..36615757,3	K562	blood:

Variant related genes	Relation type
ENSG00000150938	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1465335	0.86[JPT][hapmap]
rs17018690	1.00[CEU][hapmap];0.82[CHB][hapmap];0.83[GIH][hapmap];0.90[JPT][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3770929	0.86[JPT][hapmap]
rs3821163	0.87[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833803	chr2:36589065-36745779	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:36586200-36626600	Weak transcription	Primary B cells from cord blood	blood
2	chr2:36604000-36614400	Genic enhancers	HUVEC	blood vessel
3	chr2:36604000-36617000	Weak transcription	Primary hematopoietic stem cells	blood
4	chr2:36604400-36615000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr2:36604400-36615400	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr2:36604400-36615600	Weak transcription	Fetal Muscle Leg	muscle
7	chr2:36604400-36616400	Weak transcription	Gastric	stomach
8	chr2:36604400-36620600	Weak transcription	Fetal Brain Male	brain
9	chr2:36604400-36640400	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr2:36604400-36640600	Weak transcription	Brain Cingulate Gyrus	brain
11	chr2:36604600-36614800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr2:36604600-36617600	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr2:36604600-36620800	Weak transcription	Brain Hippocampus Middle	brain
14	chr2:36604800-36614400	Weak transcription	Rectal Smooth Muscle	rectum
15	chr2:36607600-36620800	Weak transcription	Pancreas	Pancrea
16	chr2:36607800-36615800	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr2:36608000-36614600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr2:36608600-36616200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr2:36608600-36616200	Weak transcription	Fetal Stomach	stomach
20	chr2:36608800-36614200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr2:36608800-36615600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr2:36608800-36615600	Weak transcription	Fetal Kidney	kidney
23	chr2:36608800-36615600	Weak transcription	Fetal Lung	lung
24	chr2:36609000-36615800	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr2:36609200-36619800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr2:36609400-36615600	Weak transcription	Fetal Intestine Small	intestine
27	chr2:36609400-36620000	Weak transcription	Lung	lung
28	chr2:36609600-36614200	Weak transcription	Adipose Nuclei	Adipose
29	chr2:36609800-36614600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr2:36609800-36615600	Weak transcription	Ovary	ovary
31	chr2:36610400-36617800	Enhancers	ES-I3 Cell Line	embryonic stem cell
32	chr2:36611200-36614800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
33	chr2:36611600-36614600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr2:36611600-36615600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr2:36611600-36616800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr2:36611600-36619800	Weak transcription	H9 Cell Line	embryonic stem cell
37	chr2:36611600-36632400	Weak transcription	Esophagus	oesophagus
38	chr2:36611600-36635400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
39	chr2:36612000-36616600	Enhancers	NHLF	lung
40	chr2:36612200-36615600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
41	chr2:36612200-36615600	Weak transcription	Stomach Smooth Muscle	stomach
42	chr2:36612400-36614200	Genic enhancers	NHEK	skin
43	chr2:36612400-36614800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
44	chr2:36612600-36615800	Enhancers	NHDF-Ad	bronchial
45	chr2:36612800-36614200	Enhancers	Osteobl	bone
46	chr2:36612800-36614400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr2:36612800-36615400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
48	chr2:36613000-36614400	Weak transcription	Muscle Satellite Cultured Cells	--
49	chr2:36613000-36615600	Weak transcription	Fetal Brain Female	brain
50	chr2:36613000-36615600	Weak transcription	Left Ventricle	heart

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