Variant report

Variant	rs17020611
Chromosome Location	chr2:37602770-37602771
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:37573509..37575748-chr2:37602573..37605323,2	MCF-7	breast:
2	chr2:37592607..37594449-chr2:37602351..37604768,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000115828	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1024813	0.95[CHB][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes]
rs1024816	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs11886606	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2287094	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2373001	0.95[CHB][hapmap];0.91[JPT][hapmap];0.88[ASN][1000 genomes]
rs2888464	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3770742	0.89[ASN][1000 genomes]
rs3770743	0.86[ASN][1000 genomes]
rs4670696	0.95[CHB][hapmap];0.95[JPT][hapmap];0.93[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4670697	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6544069	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6708310	0.95[CHB][hapmap];0.95[JPT][hapmap];0.95[ASN][1000 genomes]
rs72866719	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7582749	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7587371	0.95[ASN][1000 genomes]
rs7601156	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430724	chr2:37546820-37628704	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37577400-37607000	Weak transcription	Spleen	Spleen
2	chr2:37578200-37605400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr2:37578400-37604200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr2:37579800-37603000	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr2:37580200-37603400	Strong transcription	Primary neutrophils fromperipheralblood	blood
6	chr2:37583600-37607200	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr2:37589200-37602800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr2:37589800-37602800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr2:37593400-37602800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr2:37594600-37602800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr2:37598600-37602800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr2:37598800-37603600	Weak transcription	Brain Cingulate Gyrus	brain
13	chr2:37599200-37603800	Weak transcription	Fetal Brain Male	brain
14	chr2:37601800-37603200	Enhancers	Rectal Smooth Muscle	rectum
15	chr2:37602200-37603000	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
16	chr2:37602200-37603400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr2:37602200-37604000	Enhancers	Colon Smooth Muscle	Colon
18	chr2:37602200-37604200	Enhancers	Fetal Lung	lung
19	chr2:37602400-37602800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr2:37602400-37603200	Enhancers	Muscle Satellite Cultured Cells	--
21	chr2:37602400-37603200	Enhancers	Brain Germinal Matrix	brain
22	chr2:37602400-37603600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr2:37602400-37604000	Weak transcription	Primary monocytes fromperipheralblood	blood
24	chr2:37602600-37603000	Enhancers	GM12878-XiMat	blood
25	chr2:37602600-37603200	Enhancers	NHDF-Ad	bronchial
26	chr2:37602600-37603400	Enhancers	Primary T cells from cord blood	blood
27	chr2:37602600-37603400	Enhancers	Cortex derived primary cultured neurospheres	brain
28	chr2:37602600-37607600	Enhancers	Osteobl	bone

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