Variant report

Variant	rs3770742
Chromosome Location	chr2:37598090-37598091
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1024813	0.84[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs1024816	0.90[ASN][1000 genomes]
rs11886606	0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs17020611	0.89[ASN][1000 genomes]
rs2287094	0.93[ASN][1000 genomes]
rs2373001	0.93[ASN][1000 genomes]
rs2888464	0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs3770743	0.96[ASN][1000 genomes]
rs4670696	0.91[ASN][1000 genomes]
rs4670697	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs6544069	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs6708310	0.93[ASN][1000 genomes]
rs72866719	0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7582749	0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7587371	0.93[ASN][1000 genomes]
rs7601156	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430724	chr2:37546820-37628704	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37577400-37607000	Weak transcription	Spleen	Spleen
2	chr2:37578200-37605400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr2:37578400-37604200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr2:37578600-37601200	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr2:37578800-37602200	Weak transcription	Colon Smooth Muscle	Colon
6	chr2:37579800-37603000	Strong transcription	Monocytes-CD14+_RO01746	blood
7	chr2:37580200-37603400	Strong transcription	Primary neutrophils fromperipheralblood	blood
8	chr2:37583600-37607200	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr2:37589200-37602800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr2:37589800-37602800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr2:37591600-37598200	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr2:37593400-37602800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr2:37593600-37602400	Strong transcription	Primary monocytes fromperipheralblood	blood
14	chr2:37594600-37602600	Weak transcription	Osteobl	bone
15	chr2:37594600-37602800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr2:37595000-37601800	Weak transcription	Rectal Smooth Muscle	rectum
17	chr2:37595800-37599600	Weak transcription	Gastric	stomach
18	chr2:37597800-37598200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr2:37597800-37598600	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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