Variant report

Variant	rs17021117
Chromosome Location	chr3:28161190-28161191
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs17021058	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17021145	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17021159	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17021173	1.00[EUR][1000 genomes]
rs17021185	1.00[EUR][1000 genomes]
rs1873834	1.00[EUR][1000 genomes]
rs1873837	1.00[EUR][1000 genomes]
rs6801397	1.00[EUR][1000 genomes]
rs72898270	1.00[EUR][1000 genomes]
rs72898275	1.00[EUR][1000 genomes]
rs72898277	1.00[EUR][1000 genomes]
rs72898286	1.00[EUR][1000 genomes]
rs72898289	1.00[EUR][1000 genomes]
rs980956	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3328565	chr3:27991169-28915035	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv876648	chr3:28060456-28280965	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv876649	chr3:28126595-28718454	Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
4	nsv508214	chr3:28157554-28198530	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:28159000-28161200	Enhancers	ES-I3 Cell Line	embryonic stem cell
2	chr3:28159400-28166000	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr3:28161000-28162600	Weak transcription	H9 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links