Variant report

Variant	rs17021159
Chromosome Location	chr3:28180018-28180019
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs17021058	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17021117	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17021145	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17021173	1.00[EUR][1000 genomes]
rs17021185	1.00[EUR][1000 genomes]
rs1873834	1.00[EUR][1000 genomes]
rs1873837	1.00[EUR][1000 genomes]
rs6801397	1.00[EUR][1000 genomes]
rs72898270	1.00[EUR][1000 genomes]
rs72898275	1.00[EUR][1000 genomes]
rs72898277	1.00[EUR][1000 genomes]
rs72898286	1.00[EUR][1000 genomes]
rs72898289	1.00[EUR][1000 genomes]
rs980956	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3328565	chr3:27991169-28915035	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv876648	chr3:28060456-28280965	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv876649	chr3:28126595-28718454	Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
4	nsv508214	chr3:28157554-28198530	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:28176600-28181200	Weak transcription	Fetal Intestine Small	intestine
2	chr3:28176800-28180800	Weak transcription	Pancreas	Pancrea
3	chr3:28177000-28181200	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr3:28177000-28182000	Weak transcription	Small Intestine	intestine
5	chr3:28177400-28180400	Weak transcription	HepG2	liver
6	chr3:28179200-28181200	Enhancers	Fetal Lung	lung
7	chr3:28179400-28181200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr3:28179800-28180800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr3:28179800-28183000	Weak transcription	Ovary	ovary
10	chr3:28180000-28181800	Weak transcription	Rectal Mucosa Donor 31	rectum

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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