Variant report

Variant	rs17021190
Chromosome Location	chr3:28214266-28214267
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs17021147	1.00[AMR][1000 genomes]
rs17021314	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1913141	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1955312	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61620434	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3328565	chr3:27991169-28915035	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv876648	chr3:28060456-28280965	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv876649	chr3:28126595-28718454	Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
4	esv996576	chr3:28208194-28217841	Enhancers Flanking Active TSS Active TSS Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
5	nsv998002	chr3:28208676-28252031	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:28212800-28214800	Enhancers	Primary T helper naive cells from peripheral blood	blood
2	chr3:28213000-28214600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
3	chr3:28213200-28214600	Enhancers	Primary T helper cells fromperipheralblood	blood
4	chr3:28213200-28214800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
5	chr3:28213400-28214400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr3:28213400-28214600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
7	chr3:28213400-28214800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr3:28213800-28214800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
9	chr3:28213800-28214800	Enhancers	Primary T helper cells PMA-I stimulated	--
10	chr3:28213800-28214800	Enhancers	Dnd41	blood
11	chr3:28214000-28214400	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr3:28214000-28214600	Enhancers	Primary T killer memory cells from peripheral blood	blood
13	chr3:28214200-28214800	Enhancers	Primary T cells from cord blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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