Variant report

Variant	rs1913141
Chromosome Location	chr3:28294673-28294674
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:28291406..28295098-chr3:28302322..28306116,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000187118	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs17021147	1.00[AMR][1000 genomes]
rs17021190	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17021314	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1955312	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61620434	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3328565	chr3:27991169-28915035	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv876649	chr3:28126595-28718454	Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:28283800-28311400	Weak transcription	Lung	lung
2	chr3:28284000-28304800	Weak transcription	Primary B cells from cord blood	blood
3	chr3:28284000-28309600	Weak transcription	Fetal Muscle Leg	muscle
4	chr3:28284000-28313800	Weak transcription	Ovary	ovary
5	chr3:28284000-28317200	Weak transcription	Gastric	stomach
6	chr3:28284400-28305400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr3:28284400-28305800	Weak transcription	Hela-S3	cervix
8	chr3:28284400-28311000	Weak transcription	Fetal Intestine Small	intestine
9	chr3:28284400-28312600	Weak transcription	Fetal Lung	lung
10	chr3:28284400-28321800	Weak transcription	NHLF	lung
11	chr3:28284600-28305600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr3:28284600-28306000	Weak transcription	A549	lung
13	chr3:28284600-28307200	Weak transcription	Fetal Intestine Large	intestine
14	chr3:28284600-28311200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr3:28285200-28305200	Weak transcription	Primary hematopoietic stem cells	blood
16	chr3:28285200-28305600	Weak transcription	Fetal Thymus	thymus
17	chr3:28285600-28315400	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr3:28285800-28305400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr3:28285800-28311000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr3:28286000-28306000	Weak transcription	K562	blood
21	chr3:28286000-28307200	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr3:28287200-28304800	Weak transcription	Duodenum Mucosa	Duodenum
23	chr3:28287600-28317000	Weak transcription	Pancreas	Pancrea
24	chr3:28288600-28305200	Weak transcription	Liver	Liver
25	chr3:28288600-28311200	Weak transcription	Esophagus	oesophagus
26	chr3:28289400-28305200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr3:28289400-28305200	Weak transcription	Dnd41	blood
28	chr3:28291200-28295800	Enhancers	Primary monocytes fromperipheralblood	blood
29	chr3:28291400-28311200	Weak transcription	Aorta	Aorta
30	chr3:28292000-28295600	Enhancers	Primary T helper cells fromperipheralblood	blood
31	chr3:28292200-28305800	Weak transcription	Rectal Mucosa Donor 29	rectum
32	chr3:28292400-28295000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
33	chr3:28292800-28300800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
34	chr3:28292800-28311000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
35	chr3:28293000-28297800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
36	chr3:28293000-28305200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr3:28293000-28305600	Weak transcription	Left Ventricle	heart
38	chr3:28293200-28305600	Weak transcription	Primary T cells from cord blood	blood
39	chr3:28293400-28294800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr3:28293600-28294800	Enhancers	HUES64 Cell Line	embryonic stem cell
41	chr3:28293600-28294800	Enhancers	Right Atrium	heart
42	chr3:28293600-28295000	Enhancers	ES-I3 Cell Line	embryonic stem cell
43	chr3:28293600-28295000	Enhancers	HUES48 Cell Line	embryonic stem cell
44	chr3:28293600-28295000	Enhancers	HUES6 Cell Line	embryonic stem cell
45	chr3:28293600-28295000	Enhancers	iPS-15b Cell Line	embryonic stem cell
46	chr3:28293600-28295200	Enhancers	GM12878-XiMat	blood
47	chr3:28293600-28295600	Enhancers	Primary T helper naive cells from peripheral blood	blood
48	chr3:28293600-28305600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
49	chr3:28293600-28311200	Weak transcription	Sigmoid Colon	Sigmoid Colon
50	chr3:28293800-28295000	Weak transcription	Psoas Muscle	Psoas

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