Variant report

Variant	rs17021318
Chromosome Location	chr3:28307687-28307688
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:28305069..28306910-chr3:28307661..28310186,2	MCF-7	breast:
2	chr3:28282261..28284586-chr3:28306765..28309351,2	MCF-7	breast:
3	chr3:28281504..28285453-chr3:28307037..28310728,5	K562	blood:

Variant related genes	Relation type
ENSG00000187118	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1606390	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17021177	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs17021331	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17021333	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17021335	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17021341	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17021351	1.00[YRI][hapmap]
rs17021353	0.83[YRI][hapmap]
rs17021368	0.83[YRI][hapmap]
rs17021369	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17021374	0.83[YRI][hapmap]
rs17021381	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17029779	0.83[YRI][hapmap]
rs6770341	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6796243	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3328565	chr3:27991169-28915035	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv876649	chr3:28126595-28718454	Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:28283800-28311400	Weak transcription	Lung	lung
2	chr3:28284000-28309600	Weak transcription	Fetal Muscle Leg	muscle
3	chr3:28284000-28313800	Weak transcription	Ovary	ovary
4	chr3:28284000-28317200	Weak transcription	Gastric	stomach
5	chr3:28284400-28311000	Weak transcription	Fetal Intestine Small	intestine
6	chr3:28284400-28312600	Weak transcription	Fetal Lung	lung
7	chr3:28284400-28321800	Weak transcription	NHLF	lung
8	chr3:28284600-28311200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr3:28285600-28315400	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr3:28285800-28311000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr3:28287600-28317000	Weak transcription	Pancreas	Pancrea
12	chr3:28288600-28311200	Weak transcription	Esophagus	oesophagus
13	chr3:28291400-28311200	Weak transcription	Aorta	Aorta
14	chr3:28292800-28311000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr3:28293600-28311200	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr3:28293800-28309800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
17	chr3:28294000-28309200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr3:28294200-28314400	Weak transcription	HepG2	liver
19	chr3:28294400-28313800	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr3:28294400-28314200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
21	chr3:28294600-28313800	Weak transcription	Primary T helper cells PMA-I stimulated	--
22	chr3:28294800-28313800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
23	chr3:28294800-28316400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr3:28295000-28312200	Weak transcription	HUES6 Cell Line	embryonic stem cell
25	chr3:28295600-28313800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr3:28295600-28318200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
27	chr3:28298200-28309000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr3:28300000-28313800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr3:28300600-28311400	Weak transcription	Brain Anterior Caudate	brain
30	chr3:28301000-28313800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
31	chr3:28301800-28314000	Weak transcription	Brain Angular Gyrus	brain
32	chr3:28302200-28313800	Weak transcription	Primary B cells from peripheral blood	blood
33	chr3:28302600-28309400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr3:28302600-28313800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
35	chr3:28303000-28314600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
36	chr3:28303000-28316800	Weak transcription	Right Ventricle	heart
37	chr3:28303200-28310000	Weak transcription	Psoas Muscle	Psoas
38	chr3:28303400-28322200	Weak transcription	Small Intestine	intestine
39	chr3:28303600-28313800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr3:28303600-28340600	Weak transcription	NHEK	skin
41	chr3:28303800-28311200	Weak transcription	Fetal Muscle Trunk	muscle
42	chr3:28303800-28311400	Weak transcription	Cortex derived primary cultured neurospheres	brain
43	chr3:28303800-28320800	Weak transcription	Placenta	Placenta
44	chr3:28304000-28313000	Weak transcription	Fetal Kidney	kidney
45	chr3:28304000-28314000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
46	chr3:28304200-28313800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr3:28304200-28332400	Weak transcription	Rectal Smooth Muscle	rectum
48	chr3:28304400-28310800	Strong transcription	Monocytes-CD14+_RO01746	blood
49	chr3:28304600-28310200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
50	chr3:28304600-28313200	Weak transcription	Stomach Smooth Muscle	stomach

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