Variant report

Variant	rs6770341
Chromosome Location	chr3:28228053-28228054
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1606390	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17021177	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs17021318	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17021331	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17021333	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17021335	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17021341	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17021351	1.00[YRI][hapmap]
rs17021353	0.83[YRI][hapmap]
rs17021368	0.83[YRI][hapmap]
rs17021369	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs17021374	0.83[YRI][hapmap]
rs17021381	1.00[AMR][1000 genomes]
rs17029779	0.83[YRI][hapmap]
rs6796243	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3328565	chr3:27991169-28915035	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv876648	chr3:28060456-28280965	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv876649	chr3:28126595-28718454	Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
4	nsv998002	chr3:28208676-28252031	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:28227400-28228200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr3:28227600-28228200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr3:28227800-28228200	Enhancers	Colon Smooth Muscle	Colon
4	chr3:28227800-28228200	Enhancers	Monocytes-CD14+_RO01746	blood
5	chr3:28227800-28229000	Enhancers	Muscle Satellite Cultured Cells	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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