Variant report
| Variant | rs17021378 |
|---|---|
| Chromosome Location | chr4:95112268-95112269 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr4:95112105..95114691-chr4:95116145..95118228,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000250897 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:17)
| rs_ID | r2[population] |
|---|---|
| rs10018797 | 0.87[ASN][1000 genomes] |
| rs10019728 | 0.86[ASN][1000 genomes] |
| rs10029060 | 0.87[ASN][1000 genomes] |
| rs1073590 | 0.87[ASN][1000 genomes] |
| rs1472983 | 0.83[AMR][1000 genomes];0.86[ASN][1000 genomes] |
| rs17021459 | 0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs28761031 | 0.86[ASN][1000 genomes] |
| rs28832922 | 0.87[ASN][1000 genomes] |
| rs28851883 | 0.86[ASN][1000 genomes] |
| rs28879383 | 0.86[ASN][1000 genomes] |
| rs3733400 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs4693371 | 0.87[ASN][1000 genomes] |
| rs4693372 | 0.87[ASN][1000 genomes] |
| rs57359435 | 0.85[AMR][1000 genomes];0.85[ASN][1000 genomes] |
| rs61236700 | 0.91[AMR][1000 genomes];0.89[ASN][1000 genomes] |
| rs73832505 | 0.83[AMR][1000 genomes];0.89[ASN][1000 genomes] |
| rs9992640 | 0.86[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv931979 | chr4:94289958-95121723 | Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
| 2 | nsv821636 | chr4:94439636-95116590 | Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
| 3 | nsv879618 | chr4:94980768-95136164 | Enhancers Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| 4 | nsv993495 | chr4:94992315-95482578 | Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 29 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
