Variant report
| Variant | rs73832505 |
|---|---|
| Chromosome Location | chr4:95080783-95080784 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr4:94786106..94788716-chr4:95078426..95081132,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:17)
| rs_ID | r2[population] |
|---|---|
| rs10018797 | 0.94[ASN][1000 genomes] |
| rs10019728 | 0.95[ASN][1000 genomes] |
| rs10029060 | 0.94[ASN][1000 genomes] |
| rs1073590 | 0.96[ASN][1000 genomes] |
| rs1472983 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs17021378 | 0.83[AMR][1000 genomes];0.89[ASN][1000 genomes] |
| rs28463840 | 0.82[ASN][1000 genomes] |
| rs28761031 | 0.95[ASN][1000 genomes] |
| rs28832922 | 0.96[ASN][1000 genomes] |
| rs28851883 | 0.95[ASN][1000 genomes] |
| rs28879383 | 0.94[ASN][1000 genomes] |
| rs3733400 | 0.84[ASN][1000 genomes] |
| rs4693371 | 0.94[ASN][1000 genomes] |
| rs4693372 | 0.96[ASN][1000 genomes] |
| rs57359435 | 0.98[AMR][1000 genomes];0.92[ASN][1000 genomes] |
| rs61236700 | 0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs9992640 | 0.97[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv931979 | chr4:94289958-95121723 | Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
| 2 | nsv821636 | chr4:94439636-95116590 | Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
| 3 | nsv879618 | chr4:94980768-95136164 | Enhancers Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| 4 | nsv993495 | chr4:94992315-95482578 | Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 29 gene(s) | inside rSNPs | diseases |
| 5 | nsv879621 | chr4:95046907-95099194 | Enhancers Active TSS Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription | Chromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:95079600-95081000 | ZNF genes & repeats | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
| 2 | chr4:95080200-95081400 | Weak transcription | ES-I3 Cell Line | embryonic stem cell |
