Variant report

Variant	rs17021669
Chromosome Location	chr1:214116315-214116316
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11808079	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12065591	1.00[ASN][1000 genomes]
rs17021519	1.00[ASN][1000 genomes]
rs17021635	1.00[ASN][1000 genomes]
rs17021657	1.00[ASN][1000 genomes]
rs17021658	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs58653950	1.00[ASN][1000 genomes]
rs58802903	1.00[ASN][1000 genomes]
rs6656171	1.00[CHB][hapmap];0.89[YRI][hapmap];0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6665854	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73084466	1.00[ASN][1000 genomes]
rs73084470	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs74139070	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873164	chr1:214112429-214224752	Genic enhancers Enhancers Bivalent Enhancer Strong transcription Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:214108000-214120600	Weak transcription	Pancreas	Pancrea
2	chr1:214115200-214120600	Weak transcription	HepG2	liver
3	chr1:214116200-214116600	Enhancers	Brain Substantia Nigra	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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