Variant report

Variant	rs6656171
Chromosome Location	chr1:214131903-214131904
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr1:214131707-214131986	HepG2	liver:	n/a	n/a
2	NFIC	chr1:214131681-214132130	HepG2	liver:	n/a	n/a
3	JUND	chr1:214131788-214131995	HepG2	liver:	n/a	n/a
4	POLR2A	chr1:214131656-214131923	HepG2	liver:	n/a	n/a
5	HDAC2	chr1:214131622-214132213	HepG2	liver:	n/a	n/a
6	EP300	chr1:214131693-214131942	HepG2	liver:	n/a	chr1:214131869-214131876
7	HNF4A	chr1:214131738-214132066	HepG2	liver:	n/a	chr1:214131834-214131849 chr1:214131836-214131848 chr1:214131832-214131844
8	FOXA2	chr1:214131663-214132147	HepG2	liver:	n/a	n/a
9	FOXA1	chr1:214131726-214132060	HepG2	liver:	n/a	n/a
10	RXRA	chr1:214131733-214132027	HepG2	liver:	n/a	chr1:214131825-214131845 chr1:214131835-214131844
11	CEBPB	chr1:214131745-214131911	HepG2	liver:	n/a	n/a
12	CEBPB	chr1:214131732-214132040	HepG2	liver:	n/a	n/a
13	ARID3A	chr1:214131774-214132068	HepG2	liver:	n/a	n/a
14	MAFK	chr1:214131734-214132002	HepG2	liver:	n/a	n/a
15	FOXA1	chr1:214131693-214132040	HepG2	liver:	n/a	n/a
16	SP1	chr1:214131606-214132145	HepG2	liver:	n/a	chr1:214131883-214131897
17	EP300	chr1:214131576-214132323	HepG2	liver:	n/a	chr1:214131869-214131876 chr1:214132151-214132165
18	FOXA1	chr1:214131582-214132136	HepG2	liver:	n/a	n/a
19	ZBTB7A	chr1:214131777-214131950	HepG2	liver:	n/a	n/a
20	NR2F2	chr1:214131635-214132172	HepG2	liver:	n/a	chr1:214131832-214131847
21	TEAD4	chr1:214131556-214132150	HepG2	liver:	n/a	n/a
22	EP300	chr1:214131610-214132181	HepG2	liver:	n/a	chr1:214131869-214131876 chr1:214132151-214132165
23	HNF4A	chr1:214131727-214132046	HepG2	liver:	n/a	chr1:214131834-214131849 chr1:214131836-214131848 chr1:214131832-214131844
24	HNF4G	chr1:214131614-214132103	HepG2	liver:	n/a	chr1:214131835-214131850 chr1:214131836-214131848 chr1:214131832-214131844
25	FOXA1	chr1:214131674-214132137	HepG2	liver:	n/a	n/a
26	MAFF	chr1:214131732-214131957	HepG2	liver:	n/a	n/a
27	NR2F2	chr1:214131601-214132214	HepG2	liver:	n/a	chr1:214131832-214131847

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:214127035..214129236-chr1:214131143..214132817,2	K562	blood:

Variant related genes	Relation type
PROX1-AS1	TF binding region
ENSG00000230461	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11808079	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12065591	1.00[ASN][1000 genomes]
rs17021519	1.00[ASN][1000 genomes]
rs17021635	1.00[ASN][1000 genomes]
rs17021657	1.00[ASN][1000 genomes]
rs17021658	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17021669	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58653950	1.00[ASN][1000 genomes]
rs58802903	1.00[ASN][1000 genomes]
rs6665854	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73084466	1.00[ASN][1000 genomes]
rs73084470	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs74139070	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873164	chr1:214112429-214224752	Genic enhancers Enhancers Bivalent Enhancer Strong transcription Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:214124400-214135400	Enhancers	HepG2	liver
2	chr1:214128800-214132800	Enhancers	Liver	Liver

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