Variant report
| Variant | rs17021860 |
|---|---|
| Chromosome Location | chr3:28778549-28778550 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs10510614 | 0.91[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs11718080 | 0.81[EUR][1000 genomes] |
| rs11925269 | 0.81[EUR][1000 genomes] |
| rs1381393 | 0.83[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs17021806 | 0.81[EUR][1000 genomes] |
| rs4315650 | 0.81[EUR][1000 genomes] |
| rs55859567 | 0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs56212205 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs56299573 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs58150312 | 0.84[AMR][1000 genomes];0.95[ASN][1000 genomes] |
| rs59333989 | 0.81[EUR][1000 genomes] |
| rs60536736 | 0.89[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs60699441 | 0.95[ASN][1000 genomes] |
| rs61287529 | 0.81[EUR][1000 genomes] |
| rs6549874 | 0.81[EUR][1000 genomes] |
| rs6549878 | 0.81[EUR][1000 genomes] |
| rs6549880 | 0.81[EUR][1000 genomes] |
| rs6549881 | 0.81[EUR][1000 genomes] |
| rs66697705 | 1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs67946732 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6804117 | 0.81[EUR][1000 genomes] |
| rs73054642 | 0.81[EUR][1000 genomes] |
| rs73054682 | 0.85[ASN][1000 genomes] |
| rs73065090 | 0.89[ASN][1000 genomes] |
| rs73066922 | 0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs73068850 | 0.84[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3328565 | chr3:27991169-28915035 | Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 28 gene(s) | inside rSNPs | diseases |
| 2 | nsv916364 | chr3:28468275-29146280 | Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| 3 | nsv1001920 | chr3:28711075-28788920 | Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer | Chromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | n/a |
| 4 | nsv876651 | chr3:28774258-28823156 | Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:28777600-28781600 | Weak transcription | Skeletal Muscle Male | skeletal muscle |
