Variant report

Variant	rs17022320
Chromosome Location	chr3:85082774-85082775
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1376937	1.00[MEX][hapmap]
rs17022255	1.00[MEX][hapmap]
rs2101343	1.00[MEX][hapmap]
rs41363247	1.00[MEX][hapmap]
rs61493023	1.00[AMR][1000 genomes]
rs9917693	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002058	chr3:84757044-85389876	Bivalent Enhancer Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv1829788	chr3:84926769-85086403	Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv3419993	chr3:85030343-85663403	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
4	nsv492289	chr3:85066623-85319147	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv2753915	chr3:85071410-85624810	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:85068600-85090600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr3:85079600-85083200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr3:85079600-85083600	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr3:85079600-85086400	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr3:85080000-85082800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr3:85080000-85083400	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr3:85080400-85082800	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr3:85081400-85088800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr3:85082200-85082800	Active TSS	Brain Anterior Caudate	brain
10	chr3:85082200-85086400	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr3:85082200-85088800	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr3:85082400-85083800	Enhancers	H1 Cell Line	embryonic stem cell
13	chr3:85082600-85082800	Enhancers	Muscle Satellite Cultured Cells	--
14	chr3:85082600-85082800	Flanking Active TSS	Brain Angular Gyrus	brain
15	chr3:85082600-85082800	Flanking Active TSS	Brain Cingulate Gyrus	brain
16	chr3:85082600-85082800	Flanking Active TSS	Brain Hippocampus Middle	brain
17	chr3:85082600-85083600	Enhancers	Skeletal Muscle Female	skeletal muscle
18	chr3:85082600-85090000	Weak transcription	Fetal Brain Female	brain
19	chr3:85082600-85090400	Weak transcription	Fetal Brain Male	brain
20	chr3:85082600-85091600	Weak transcription	iPS-20b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links