Variant report

Variant	rs17022788
Chromosome Location	chr2:100181280-100181281
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:100179261..100182379-chr2:100186493..100190698,4	MCF-7	breast:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs17022741	0.83[EUR][1000 genomes]
rs2167339	0.83[EUR][1000 genomes]
rs56684522	0.83[EUR][1000 genomes]
rs57599963	0.83[EUR][1000 genomes]
rs57668619	1.00[EUR][1000 genomes]
rs57969550	0.83[EUR][1000 genomes]
rs58226642	0.83[EUR][1000 genomes]
rs58780429	0.83[EUR][1000 genomes]
rs59311105	0.83[EUR][1000 genomes]
rs59753430	0.83[EUR][1000 genomes]
rs59859749	0.83[EUR][1000 genomes]
rs60633946	0.83[EUR][1000 genomes]
rs6745673	1.00[EUR][1000 genomes]
rs6761053	0.83[EUR][1000 genomes]
rs6761507	0.83[EUR][1000 genomes]
rs73964150	0.83[EUR][1000 genomes]
rs73964155	0.83[EUR][1000 genomes]
rs73964157	0.83[EUR][1000 genomes]
rs73964158	0.83[EUR][1000 genomes]
rs73964166	1.00[EUR][1000 genomes]
rs7570405	0.83[EUR][1000 genomes]
rs7595242	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431424	chr2:99652682-100494682	Flanking Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv962113	chr2:100022168-100317461	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:100158600-100189200	Weak transcription	Rectal Smooth Muscle	rectum
2	chr2:100161000-100181600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr2:100161200-100190200	Weak transcription	Right Atrium	heart
4	chr2:100161800-100187800	Weak transcription	Brain Angular Gyrus	brain
5	chr2:100161800-100211200	Weak transcription	Fetal Kidney	kidney
6	chr2:100162600-100193400	Weak transcription	Liver	Liver
7	chr2:100162800-100219200	Strong transcription	Primary B cells from peripheral blood	blood
8	chr2:100163200-100203000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr2:100164000-100204800	Weak transcription	Primary T helper cells fromperipheralblood	blood
10	chr2:100165200-100190000	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr2:100165800-100185600	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr2:100167600-100202000	Weak transcription	Colon Smooth Muscle	Colon
13	chr2:100168000-100187800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr2:100168000-100188000	Weak transcription	NH-A	brain
15	chr2:100169200-100193200	Weak transcription	Fetal Thymus	thymus
16	chr2:100171000-100181400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr2:100171000-100194000	Weak transcription	Stomach Smooth Muscle	stomach
18	chr2:100171200-100202600	Weak transcription	Gastric	stomach
19	chr2:100171400-100181600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr2:100171400-100183800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr2:100171400-100184000	Weak transcription	Adipose Nuclei	Adipose
22	chr2:100171400-100184000	Weak transcription	Lung	lung
23	chr2:100171400-100184000	Weak transcription	Thymus	Thymus
24	chr2:100171400-100186600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr2:100171400-100187200	Weak transcription	Brain Germinal Matrix	brain
26	chr2:100171400-100203800	Weak transcription	Aorta	Aorta
27	chr2:100171400-100203800	Weak transcription	Spleen	Spleen
28	chr2:100172600-100181600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr2:100172600-100183800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
30	chr2:100172600-100209600	Weak transcription	Primary T helper cells PMA-I stimulated	--
31	chr2:100173200-100194800	Weak transcription	Monocytes-CD14+_RO01746	blood
32	chr2:100173400-100202600	Weak transcription	Primary monocytes fromperipheralblood	blood
33	chr2:100174800-100183800	Weak transcription	Fetal Brain Female	brain
34	chr2:100175600-100183200	Weak transcription	Dnd41	blood
35	chr2:100175600-100183800	Weak transcription	Fetal Lung	lung
36	chr2:100176200-100183800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr2:100177400-100204000	Weak transcription	Fetal Heart	heart
38	chr2:100178800-100184000	Weak transcription	Fetal Intestine Large	intestine
39	chr2:100178800-100185400	Weak transcription	Fetal Intestine Small	intestine
40	chr2:100179600-100184600	Weak transcription	Fetal Brain Male	brain
41	chr2:100179800-100181600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr2:100180200-100182800	Strong transcription	Primary B cells from cord blood	blood
43	chr2:100180600-100182800	Strong transcription	Primary hematopoietic stem cells	blood
44	chr2:100180800-100188200	Strong transcription	Primary T cells from cord blood	blood
45	chr2:100181200-100182000	Strong transcription	Ovary	ovary
46	chr2:100181200-100182200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr2:100181200-100182400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr2:100181200-100185800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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