Variant report

Variant	rs6745673
Chromosome Location	chr2:100192413-100192414
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:100192136..100194789-chr2:100197191..100199063,3	MCF-7	breast:
2	chr2:100190593..100193147-chr2:100224653..100226981,2	MCF-7	breast:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs17022741	0.83[EUR][1000 genomes]
rs17022788	1.00[EUR][1000 genomes]
rs2167339	0.83[EUR][1000 genomes]
rs56684522	0.83[EUR][1000 genomes]
rs57599963	0.83[EUR][1000 genomes]
rs57668619	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57969550	0.83[EUR][1000 genomes]
rs58226642	0.83[EUR][1000 genomes]
rs58780429	0.83[EUR][1000 genomes]
rs59311105	0.83[EUR][1000 genomes]
rs59753430	0.83[EUR][1000 genomes]
rs59859749	0.83[EUR][1000 genomes]
rs60633946	0.83[EUR][1000 genomes]
rs6761053	0.83[EUR][1000 genomes]
rs6761507	0.83[EUR][1000 genomes]
rs73964150	0.83[EUR][1000 genomes]
rs73964155	0.83[EUR][1000 genomes]
rs73964157	0.83[EUR][1000 genomes]
rs73964158	0.83[EUR][1000 genomes]
rs73964166	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7570405	0.83[EUR][1000 genomes]
rs7595242	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431424	chr2:99652682-100494682	Flanking Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv962113	chr2:100022168-100317461	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:100161800-100211200	Weak transcription	Fetal Kidney	kidney
2	chr2:100162600-100193400	Weak transcription	Liver	Liver
3	chr2:100162800-100219200	Strong transcription	Primary B cells from peripheral blood	blood
4	chr2:100163200-100203000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr2:100164000-100204800	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr2:100167600-100202000	Weak transcription	Colon Smooth Muscle	Colon
7	chr2:100169200-100193200	Weak transcription	Fetal Thymus	thymus
8	chr2:100171000-100194000	Weak transcription	Stomach Smooth Muscle	stomach
9	chr2:100171200-100202600	Weak transcription	Gastric	stomach
10	chr2:100171400-100203800	Weak transcription	Aorta	Aorta
11	chr2:100171400-100203800	Weak transcription	Spleen	Spleen
12	chr2:100172600-100209600	Weak transcription	Primary T helper cells PMA-I stimulated	--
13	chr2:100173200-100194800	Weak transcription	Monocytes-CD14+_RO01746	blood
14	chr2:100173400-100202600	Weak transcription	Primary monocytes fromperipheralblood	blood
15	chr2:100177400-100204000	Weak transcription	Fetal Heart	heart
16	chr2:100182000-100193800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr2:100183600-100195200	Strong transcription	Primary B cells from cord blood	blood
18	chr2:100184200-100196800	Weak transcription	Lung	lung
19	chr2:100184200-100206600	Weak transcription	Esophagus	oesophagus
20	chr2:100184400-100211800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
21	chr2:100184600-100193200	Weak transcription	Thymus	Thymus
22	chr2:100184600-100193400	Weak transcription	Dnd41	blood
23	chr2:100184800-100193200	Weak transcription	Adipose Nuclei	Adipose
24	chr2:100186400-100192800	Enhancers	Fetal Brain Male	brain
25	chr2:100186800-100193400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr2:100186800-100214600	Weak transcription	Fetal Intestine Small	intestine
27	chr2:100187200-100193200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr2:100187400-100192800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr2:100187800-100193400	Weak transcription	Fetal Lung	lung
30	chr2:100187800-100211600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
31	chr2:100188200-100210400	Weak transcription	Brain Substantia Nigra	brain
32	chr2:100188400-100205000	Weak transcription	Brain Angular Gyrus	brain
33	chr2:100188400-100205000	Weak transcription	Brain Anterior Caudate	brain
34	chr2:100188400-100206800	Weak transcription	Placenta	Placenta
35	chr2:100189400-100202800	Weak transcription	NH-A	brain
36	chr2:100189600-100193400	Weak transcription	H9 Cell Line	embryonic stem cell
37	chr2:100189600-100202000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
38	chr2:100190000-100193200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
39	chr2:100190000-100193400	Weak transcription	HUES48 Cell Line	embryonic stem cell
40	chr2:100190400-100193800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
41	chr2:100190400-100205000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
42	chr2:100190400-100218200	Weak transcription	Brain Inferior Temporal Lobe	brain
43	chr2:100190600-100193000	Weak transcription	Primary T cells from cord blood	blood
44	chr2:100190800-100193400	Weak transcription	Primary hematopoietic stem cells	blood
45	chr2:100190800-100204000	Weak transcription	Brain Hippocampus Middle	brain
46	chr2:100191000-100195400	Weak transcription	Right Atrium	heart
47	chr2:100191400-100210800	Weak transcription	Brain Cingulate Gyrus	brain
48	chr2:100191400-100215000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr2:100191600-100192800	Weak transcription	Fetal Stomach	stomach
50	chr2:100191600-100193400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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