Variant report

Variant	rs17023155
Chromosome Location	chr1:214712251-214712252
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs17734395	0.82[GIH][hapmap]
rs17734758	1.00[CHD][hapmap];0.81[GIH][hapmap]
rs4077549	1.00[CHD][hapmap]
rs6540846	1.00[CHD][hapmap]
rs6540847	0.80[CEU][hapmap];1.00[CHD][hapmap]
rs6698434	0.80[CEU][hapmap];0.89[TSI][hapmap]
rs67542303	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72759634	0.83[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17023155	PROX1	cis	cerebellum	SCAN

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:214699200-214722000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr1:214699200-214722400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr1:214699800-214715200	Weak transcription	Stomach Mucosa	stomach
4	chr1:214701200-214719000	Weak transcription	Hela-S3	cervix
5	chr1:214702800-214718800	Weak transcription	Aorta	Aorta
6	chr1:214705600-214713000	Weak transcription	Fetal Kidney	kidney
7	chr1:214706600-214713600	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr1:214706600-214713800	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr1:214706600-214714600	Weak transcription	Lung	lung
10	chr1:214706600-214715600	Weak transcription	Esophagus	oesophagus
11	chr1:214706600-214715600	Weak transcription	Fetal Muscle Trunk	muscle
12	chr1:214706600-214715600	Weak transcription	Fetal Muscle Leg	muscle
13	chr1:214706600-214715600	Weak transcription	Left Ventricle	heart
14	chr1:214706600-214715600	Weak transcription	Ovary	ovary
15	chr1:214706600-214720000	Weak transcription	Fetal Intestine Small	intestine
16	chr1:214706600-214720600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr1:214706800-214713200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr1:214706800-214713600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr1:214706800-214713600	Weak transcription	NHLF	lung
20	chr1:214706800-214713800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr1:214706800-214714600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr1:214706800-214715600	Weak transcription	Gastric	stomach
23	chr1:214706800-214715600	Weak transcription	Pancreas	Pancrea
24	chr1:214707000-214718200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr1:214710400-214712400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr1:214710400-214716800	Enhancers	Skeletal Muscle Male	skeletal muscle
27	chr1:214710600-214712400	Enhancers	Breast Myoepithelial Primary Cells	Breast
28	chr1:214710600-214712400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr1:214710600-214712400	Enhancers	Rectal Smooth Muscle	rectum
30	chr1:214710600-214712400	Enhancers	HMEC	breast
31	chr1:214710600-214713400	Enhancers	Fetal Lung	lung
32	chr1:214710600-214713600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr1:214710600-214714000	Enhancers	Fetal Heart	heart
34	chr1:214710600-214714200	Enhancers	NHDF-Ad	bronchial
35	chr1:214710800-214712600	Enhancers	HUES48 Cell Line	embryonic stem cell
36	chr1:214710800-214714200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr1:214710800-214714200	Enhancers	Duodenum Smooth Muscle	Duodenum
38	chr1:214710800-214718600	Weak transcription	Right Atrium	heart
39	chr1:214711000-214713000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr1:214711000-214714000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr1:214711000-214715600	Weak transcription	Spleen	Spleen
42	chr1:214711400-214712400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr1:214711400-214712600	Enhancers	HUES6 Cell Line	embryonic stem cell
44	chr1:214711400-214714800	Enhancers	HSMM	muscle
45	chr1:214711400-214714800	Enhancers	Osteobl	bone
46	chr1:214711600-214712400	Enhancers	iPS-20b Cell Line	embryonic stem cell
47	chr1:214711600-214713000	Weak transcription	HUVEC	blood vessel
48	chr1:214711600-214713600	Weak transcription	NH-A	brain
49	chr1:214711600-214714800	Enhancers	NHEK	skin
50	chr1:214711600-214716000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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