Variant report

Variant	rs6698434
Chromosome Location	chr1:214704670-214704671
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	KAP1	chr1:214704606-214705308	U2OS	brain:	n/a	n/a
2	KAP1	chr1:214704565-214705318	HEK293	kidney:	n/a	n/a

Variant related genes	Relation type
KRT18P12	TF binding region

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10494981	0.88[CEU][hapmap]
rs12136882	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12564111	0.94[CHB][hapmap];0.94[JPT][hapmap];0.96[ASN][1000 genomes]
rs12564450	0.94[CHB][hapmap];0.97[CHD][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes]
rs12565444	0.96[ASN][1000 genomes]
rs12568895	0.95[ASN][1000 genomes]
rs17023103	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs17023144	0.88[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17023155	0.80[CEU][hapmap];0.89[TSI][hapmap]
rs17734395	0.88[CEU][hapmap]
rs17734456	0.88[CEU][hapmap]
rs17734758	0.88[CEU][hapmap]
rs17734993	0.88[CEU][hapmap]
rs17791024	0.88[CEU][hapmap]
rs4077549	0.88[CEU][hapmap]
rs57009338	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59217266	0.96[ASN][1000 genomes]
rs6540847	1.00[CEU][hapmap];0.88[TSI][hapmap]
rs6540848	0.88[CEU][hapmap];0.92[ASN][1000 genomes]
rs6662947	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6678591	0.94[CHB][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes]
rs6689199	0.95[ASN][1000 genomes]
rs6701105	1.00[CEU][hapmap]
rs6701211	0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:214665400-214705400	Weak transcription	Right Ventricle	heart
2	chr1:214688400-214706200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr1:214688400-214710600	Weak transcription	Spleen	Spleen
4	chr1:214690600-214705600	Weak transcription	Ovary	ovary
5	chr1:214690600-214705600	Weak transcription	Pancreas	Pancrea
6	chr1:214691400-214705600	Weak transcription	Placenta	Placenta
7	chr1:214692400-214710600	Weak transcription	HUVEC	blood vessel
8	chr1:214694400-214706400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr1:214694600-214705400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr1:214697800-214706000	Weak transcription	Lung	lung
11	chr1:214698000-214704800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr1:214698800-214710800	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr1:214699000-214705400	Weak transcription	Fetal Intestine Small	intestine
14	chr1:214699200-214705600	Weak transcription	Gastric	stomach
15	chr1:214699200-214706200	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr1:214699200-214706200	Weak transcription	Esophagus	oesophagus
17	chr1:214699200-214711400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr1:214699200-214711600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
19	chr1:214699200-214722000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr1:214699200-214722400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr1:214699400-214704800	Weak transcription	Fetal Muscle Leg	muscle
22	chr1:214699400-214705400	Weak transcription	Fetal Stomach	stomach
23	chr1:214699400-214706000	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr1:214699600-214704800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr1:214699600-214705400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr1:214699600-214705400	Weak transcription	Fetal Muscle Trunk	muscle
27	chr1:214699800-214715200	Weak transcription	Stomach Mucosa	stomach
28	chr1:214700000-214704800	Weak transcription	Muscle Satellite Cultured Cells	--
29	chr1:214700000-214705400	Weak transcription	NHLF	lung
30	chr1:214700000-214706000	Weak transcription	Stomach Smooth Muscle	stomach
31	chr1:214700600-214705400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr1:214700800-214706400	Weak transcription	Left Ventricle	heart
33	chr1:214700800-214711400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
34	chr1:214701200-214705200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr1:214701200-214705400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr1:214701200-214705600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr1:214701200-214710400	Weak transcription	Adipose Nuclei	Adipose
38	chr1:214701200-214710800	Weak transcription	HUES48 Cell Line	embryonic stem cell
39	chr1:214701200-214710800	Weak transcription	NH-A	brain
40	chr1:214701200-214719000	Weak transcription	Hela-S3	cervix
41	chr1:214701400-214704800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
42	chr1:214701400-214705200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr1:214701400-214705400	Weak transcription	HUES6 Cell Line	embryonic stem cell
44	chr1:214701400-214710600	Weak transcription	NHDF-Ad	bronchial
45	chr1:214701600-214710400	Weak transcription	A549	lung
46	chr1:214701800-214705200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr1:214702200-214706800	Weak transcription	Fetal Intestine Large	intestine
48	chr1:214702800-214718800	Weak transcription	Aorta	Aorta
49	chr1:214703000-214704800	Weak transcription	HMEC	breast
50	chr1:214703000-214705400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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