Variant report

Variant	rs6662947
Chromosome Location	chr1:214699159-214699160
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:214697599..214700656-chr1:214706044..214709050,3	K562	blood:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10494981	1.00[CEU][hapmap]
rs12136882	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12564111	0.94[CHB][hapmap];0.94[JPT][hapmap];0.96[ASN][1000 genomes]
rs12564450	0.94[CHB][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes]
rs12565444	0.96[ASN][1000 genomes]
rs12568895	0.95[ASN][1000 genomes]
rs17023103	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs17023144	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17734395	1.00[CEU][hapmap]
rs17734456	1.00[CEU][hapmap]
rs17734758	1.00[CEU][hapmap]
rs17734993	1.00[CEU][hapmap]
rs17791024	1.00[CEU][hapmap]
rs4074425	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4077549	1.00[CEU][hapmap]
rs57009338	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59217266	0.96[ASN][1000 genomes]
rs6540847	0.88[CEU][hapmap]
rs6540848	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6678591	0.94[CHB][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes]
rs6689199	0.95[ASN][1000 genomes]
rs6698434	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6701105	0.88[CEU][hapmap]
rs6701211	0.99[ASN][1000 genomes]

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:214665400-214705400	Weak transcription	Right Ventricle	heart
2	chr1:214669800-214700400	Weak transcription	Aorta	Aorta
3	chr1:214688400-214706200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr1:214688400-214710600	Weak transcription	Spleen	Spleen
5	chr1:214690600-214705600	Weak transcription	Ovary	ovary
6	chr1:214690600-214705600	Weak transcription	Pancreas	Pancrea
7	chr1:214691400-214705600	Weak transcription	Placenta	Placenta
8	chr1:214692400-214710600	Weak transcription	HUVEC	blood vessel
9	chr1:214693000-214701000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr1:214694400-214706400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr1:214694600-214705400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr1:214696200-214701000	Weak transcription	Fetal Heart	heart
13	chr1:214696400-214700800	Enhancers	Psoas Muscle	Psoas
14	chr1:214697000-214701200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr1:214697200-214700000	Weak transcription	Left Ventricle	heart
16	chr1:214697200-214701400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr1:214697400-214702400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr1:214697600-214700000	Enhancers	Muscle Satellite Cultured Cells	--
19	chr1:214697600-214701200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr1:214697600-214701200	Enhancers	NH-A	brain
21	chr1:214697800-214699200	Enhancers	Gastric	stomach
22	chr1:214697800-214699200	Enhancers	Rectal Smooth Muscle	rectum
23	chr1:214697800-214699200	Genic enhancers	NHEK	skin
24	chr1:214697800-214699400	Enhancers	Primary monocytes fromperipheralblood	blood
25	chr1:214697800-214699400	Enhancers	Adipose Nuclei	Adipose
26	chr1:214697800-214699400	Enhancers	Fetal Muscle Leg	muscle
27	chr1:214697800-214699600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr1:214697800-214699600	Enhancers	Fetal Thymus	thymus
29	chr1:214697800-214700000	Enhancers	Hela-S3	cervix
30	chr1:214697800-214701400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr1:214697800-214706000	Weak transcription	Lung	lung
32	chr1:214698000-214699200	Enhancers	Primary T cells from cord blood	blood
33	chr1:214698000-214699200	Weak transcription	Fetal Muscle Trunk	muscle
34	chr1:214698000-214699400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr1:214698000-214699400	Enhancers	Primary hematopoietic stem cells	blood
36	chr1:214698000-214699400	Weak transcription	Right Atrium	heart
37	chr1:214698000-214700600	Enhancers	Breast Myoepithelial Primary Cells	Breast
38	chr1:214698000-214704800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
39	chr1:214698200-214699200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr1:214698200-214699200	Enhancers	HUES6 Cell Line	embryonic stem cell
41	chr1:214698200-214699200	Enhancers	HSMMtube	muscle
42	chr1:214698200-214699200	Enhancers	Monocytes-CD14+_RO01746	blood
43	chr1:214698200-214699400	Enhancers	ES-I3 Cell Line	embryonic stem cell
44	chr1:214698200-214699400	Enhancers	Primary hematopoietic stem cells short term culture	blood
45	chr1:214698200-214699400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr1:214698200-214699400	Enhancers	Fetal Kidney	kidney
47	chr1:214698200-214699600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr1:214698200-214699800	Enhancers	Stomach Mucosa	stomach
49	chr1:214698200-214700000	Enhancers	Colon Smooth Muscle	Colon
50	chr1:214698200-214700000	Enhancers	HSMM	muscle

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