Variant report

Variant	rs12564111
Chromosome Location	chr1:214693975-214693976
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:214692777..214695349-chr1:214723508..214725233,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000152104	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12136882	0.96[ASN][1000 genomes]
rs12564450	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12565444	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12568895	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17023023	1.00[AMR][1000 genomes]
rs17023103	0.94[CHB][hapmap];0.94[JPT][hapmap];0.89[ASN][1000 genomes]
rs17023144	0.94[CHB][hapmap];0.94[JPT][hapmap];0.96[ASN][1000 genomes]
rs4639728	1.00[AMR][1000 genomes]
rs57009338	0.96[ASN][1000 genomes]
rs59217266	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60222293	1.00[AMR][1000 genomes]
rs6540848	0.88[ASN][1000 genomes]
rs6662947	0.94[CHB][hapmap];0.94[JPT][hapmap];0.96[ASN][1000 genomes]
rs6678591	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs6689199	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6698434	0.94[CHB][hapmap];0.94[JPT][hapmap];0.96[ASN][1000 genomes]
rs6701211	0.95[ASN][1000 genomes]

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:214665400-214705400	Weak transcription	Right Ventricle	heart
2	chr1:214669800-214700400	Weak transcription	Aorta	Aorta
3	chr1:214686800-214694400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr1:214687800-214698400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr1:214688400-214697800	Weak transcription	Fetal Muscle Leg	muscle
6	chr1:214688400-214698400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr1:214688400-214706200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr1:214688400-214710600	Weak transcription	Spleen	Spleen
9	chr1:214689400-214694200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr1:214689400-214694400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr1:214690000-214694000	Weak transcription	Colon Smooth Muscle	Colon
12	chr1:214690200-214694000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr1:214690200-214697600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr1:214690400-214695800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr1:214690600-214694200	Weak transcription	Psoas Muscle	Psoas
16	chr1:214690600-214694600	Enhancers	NHDF-Ad	bronchial
17	chr1:214690600-214694800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr1:214690600-214696400	Weak transcription	Left Ventricle	heart
19	chr1:214690600-214697000	Weak transcription	Lung	lung
20	chr1:214690600-214697800	Weak transcription	Adipose Nuclei	Adipose
21	chr1:214690600-214697800	Weak transcription	Rectal Smooth Muscle	rectum
22	chr1:214690600-214697800	Weak transcription	Right Atrium	heart
23	chr1:214690600-214698400	Weak transcription	Esophagus	oesophagus
24	chr1:214690600-214705600	Weak transcription	Ovary	ovary
25	chr1:214690600-214705600	Weak transcription	Pancreas	Pancrea
26	chr1:214690800-214698200	Weak transcription	Stomach Mucosa	stomach
27	chr1:214691000-214695800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr1:214691200-214696200	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr1:214691400-214705600	Weak transcription	Placenta	Placenta
30	chr1:214692000-214694000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
31	chr1:214692000-214694000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr1:214692000-214694000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr1:214692000-214694200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr1:214692000-214697000	Weak transcription	Gastric	stomach
35	chr1:214692200-214694200	Enhancers	NH-A	brain
36	chr1:214692200-214694600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr1:214692400-214696800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr1:214692400-214698400	Weak transcription	A549	lung
39	chr1:214692400-214710600	Weak transcription	HUVEC	blood vessel
40	chr1:214692800-214694800	Enhancers	HUES64 Cell Line	embryonic stem cell
41	chr1:214692800-214697400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr1:214692800-214697600	Weak transcription	HSMM	muscle
43	chr1:214692800-214698200	Weak transcription	NHLF	lung
44	chr1:214693000-214696200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr1:214693000-214697600	Weak transcription	Muscle Satellite Cultured Cells	--
46	chr1:214693000-214701000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr1:214693200-214697800	Weak transcription	NHEK	skin
48	chr1:214693600-214694600	Enhancers	Fetal Kidney	kidney
49	chr1:214693800-214694000	Enhancers	H1 Cell Line	embryonic stem cell
50	chr1:214693800-214694200	Enhancers	H9 Cell Line	embryonic stem cell

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