Variant report

Variant	rs17023144
Chromosome Location	chr1:214689396-214689397
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:214683964..214686596-chr1:214687813..214690608,3	MCF-7	breast:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10494981	1.00[CEU][hapmap];0.93[TSI][hapmap]
rs12136882	1.00[ASN][1000 genomes]
rs12564111	0.94[CHB][hapmap];0.94[JPT][hapmap];0.96[ASN][1000 genomes]
rs12564450	0.94[CHB][hapmap];0.94[CHD][hapmap];0.94[JPT][hapmap];0.82[YRI][hapmap];0.95[ASN][1000 genomes]
rs12565444	0.96[ASN][1000 genomes]
rs12568895	0.95[ASN][1000 genomes]
rs17023103	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17734395	1.00[CEU][hapmap];0.86[TSI][hapmap];0.89[AMR][1000 genomes]
rs17734456	1.00[CEU][hapmap];0.92[AMR][1000 genomes]
rs17734758	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes]
rs17734879	0.88[AMR][1000 genomes]
rs17734993	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17791024	1.00[CEU][hapmap];0.89[AMR][1000 genomes]
rs4077549	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4448491	0.88[AMR][1000 genomes]
rs4529685	0.88[AMR][1000 genomes]
rs57009338	1.00[ASN][1000 genomes]
rs59217266	0.96[ASN][1000 genomes]
rs6540846	1.00[MEX][hapmap];0.93[TSI][hapmap]
rs6540847	0.88[CEU][hapmap];0.86[MEX][hapmap];0.87[TSI][hapmap]
rs6540848	1.00[CEU][hapmap];0.92[ASN][1000 genomes]
rs6662947	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6678591	0.94[CHB][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes]
rs6689199	0.95[ASN][1000 genomes]
rs6698434	0.88[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6701105	0.87[CEU][hapmap]
rs6701211	0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6701315	0.86[MEX][hapmap];0.86[TSI][hapmap];0.85[AMR][1000 genomes]

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:214665400-214705400	Weak transcription	Right Ventricle	heart
2	chr1:214669800-214700400	Weak transcription	Aorta	Aorta
3	chr1:214677200-214690200	Weak transcription	Small Intestine	intestine
4	chr1:214681600-214690200	Weak transcription	Pancreas	Pancrea
5	chr1:214686600-214690400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr1:214686800-214690000	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr1:214686800-214693000	Enhancers	Muscle Satellite Cultured Cells	--
8	chr1:214686800-214694400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr1:214687000-214690400	Enhancers	NHDF-Ad	bronchial
10	chr1:214687400-214690400	Enhancers	HUVEC	blood vessel
11	chr1:214687600-214689800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr1:214687600-214689800	Enhancers	Primary monocytes fromperipheralblood	blood
13	chr1:214687600-214690600	Enhancers	Adipose Nuclei	Adipose
14	chr1:214687600-214690800	Enhancers	Fetal Intestine Large	intestine
15	chr1:214687800-214689600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr1:214687800-214689800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr1:214687800-214689800	Enhancers	NHEK	skin
18	chr1:214687800-214690000	Enhancers	Duodenum Smooth Muscle	Duodenum
19	chr1:214687800-214698400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
20	chr1:214688000-214689400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr1:214688000-214689800	Enhancers	Primary neutrophils fromperipheralblood	blood
22	chr1:214688000-214690600	Enhancers	HMEC	breast
23	chr1:214688200-214689400	Weak transcription	Psoas Muscle	Psoas
24	chr1:214688200-214689400	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr1:214688200-214689600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr1:214688200-214690200	Weak transcription	Fetal Heart	heart
27	chr1:214688200-214690600	Enhancers	HUES64 Cell Line	embryonic stem cell
28	chr1:214688200-214692000	Enhancers	ES-I3 Cell Line	embryonic stem cell
29	chr1:214688200-214693800	Weak transcription	H9 Cell Line	embryonic stem cell
30	chr1:214688400-214689400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr1:214688400-214689400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
32	chr1:214688400-214689400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr1:214688400-214689400	Weak transcription	Placenta	Placenta
34	chr1:214688400-214689400	Weak transcription	Fetal Stomach	stomach
35	chr1:214688400-214689400	Weak transcription	Hela-S3	cervix
36	chr1:214688400-214689600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
37	chr1:214688400-214689600	Weak transcription	Esophagus	oesophagus
38	chr1:214688400-214689600	Weak transcription	Left Ventricle	heart
39	chr1:214688400-214690200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr1:214688400-214690200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr1:214688400-214690200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr1:214688400-214690200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr1:214688400-214690200	Weak transcription	Lung	lung
44	chr1:214688400-214690200	Weak transcription	Ovary	ovary
45	chr1:214688400-214690200	Weak transcription	Right Atrium	heart
46	chr1:214688400-214690400	Weak transcription	Rectal Mucosa Donor 31	rectum
47	chr1:214688400-214690600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr1:214688400-214690800	Enhancers	HUES6 Cell Line	embryonic stem cell
49	chr1:214688400-214692000	Enhancers	NH-A	brain
50	chr1:214688400-214697800	Weak transcription	Fetal Muscle Leg	muscle

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