Variant report

Variant	rs10494981
Chromosome Location	chr1:214721975-214721976
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:214721216..214723356-chr1:214748283..214749976,2	MCF-7	breast:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11588026	0.83[ASN][1000 genomes]
rs17023103	1.00[CEU][hapmap]
rs17023144	1.00[CEU][hapmap];0.93[TSI][hapmap]
rs17734395	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17734456	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17734758	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap];1.00[ASN][1000 genomes]
rs17734879	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17734993	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17791024	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2362215	1.00[LWK][hapmap];1.00[MKK][hapmap]
rs35329321	1.00[CHB][hapmap];0.85[TSI][hapmap]
rs4074425	1.00[ASN][1000 genomes]
rs4077549	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41307662	1.00[ASN][1000 genomes]
rs4448491	1.00[ASN][1000 genomes]
rs4529685	1.00[ASN][1000 genomes]
rs4535975	1.00[ASN][1000 genomes]
rs6540846	1.00[CHB][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.85[TSI][hapmap];1.00[ASN][1000 genomes]
rs6540847	0.88[CEU][hapmap];1.00[CHB][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.81[TSI][hapmap];1.00[ASN][1000 genomes]
rs6540848	1.00[CEU][hapmap]
rs6662947	1.00[CEU][hapmap]
rs6675792	1.00[CHB][hapmap]
rs6698434	0.88[CEU][hapmap]
rs6701105	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6701315	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[TSI][hapmap];1.00[ASN][1000 genomes]
rs67542303	1.00[ASN][1000 genomes]
rs72759634	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7550419	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:214699200-214722000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr1:214699200-214722400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr1:214714000-214722400	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr1:214714000-214722400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr1:214714000-214722400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr1:214714000-214722400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr1:214716000-214722200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr1:214716000-214722400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr1:214716000-214722400	Weak transcription	Fetal Muscle Trunk	muscle
10	chr1:214716000-214722400	Weak transcription	Gastric	stomach
11	chr1:214716200-214722400	Weak transcription	Fetal Stomach	stomach
12	chr1:214716600-214722200	Weak transcription	Fetal Heart	heart
13	chr1:214718600-214722200	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr1:214718600-214722800	Enhancers	Left Ventricle	heart
15	chr1:214718600-214723400	Enhancers	Stomach Mucosa	stomach
16	chr1:214718800-214722400	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr1:214719000-214722200	Enhancers	Psoas Muscle	Psoas
18	chr1:214719600-214722200	Weak transcription	Right Ventricle	heart
19	chr1:214719600-214723200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr1:214719800-214722400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr1:214719800-214722400	Enhancers	Placenta Amnion	Placenta Amnion
22	chr1:214719800-214722800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
23	chr1:214719800-214723600	Flanking Active TSS	HUVEC	blood vessel
24	chr1:214720000-214722600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr1:214720000-214722800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr1:214720200-214722400	Weak transcription	H9 Cell Line	embryonic stem cell
27	chr1:214720600-214722200	Enhancers	NHLF	lung
28	chr1:214720600-214722400	Flanking Active TSS	HMEC	breast
29	chr1:214720600-214722600	Enhancers	Colon Smooth Muscle	Colon
30	chr1:214720600-214723000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr1:214720600-214723000	Enhancers	Fetal Lung	lung
32	chr1:214720800-214722000	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr1:214720800-214722600	Enhancers	HUES48 Cell Line	embryonic stem cell
34	chr1:214720800-214722800	Weak transcription	Lung	lung
35	chr1:214720800-214723200	Enhancers	HepG2	liver
36	chr1:214720800-214723600	Enhancers	Dnd41	blood
37	chr1:214721000-214722400	Weak transcription	Fetal Intestine Large	intestine
38	chr1:214721000-214722400	Enhancers	Hela-S3	cervix
39	chr1:214721000-214722600	Enhancers	A549	lung
40	chr1:214721000-214722800	Weak transcription	Fetal Intestine Small	intestine
41	chr1:214721000-214724200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr1:214721200-214722000	Transcr. at gene 5' and 3'	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr1:214721200-214722000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr1:214721200-214722000	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr1:214721200-214722200	Enhancers	Adipose Nuclei	Adipose
46	chr1:214721200-214722400	Weak transcription	Aorta	Aorta
47	chr1:214721200-214722400	Enhancers	HSMMtube	muscle
48	chr1:214721200-214722800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr1:214721200-214723000	Enhancers	Fetal Muscle Leg	muscle
50	chr1:214721200-214723400	Transcr. at gene 5' and 3'	Foreskin Keratinocyte Primary Cells skin02	Skin

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