Variant report

Variant	rs6675792
Chromosome Location	chr1:214732288-214732289
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:214722211..214723864-chr1:214731455..214733732,2	K562	blood:
2	chr1:214723448..214725920-chr1:214732193..214733696,2	MCF-7	breast:
3	chr1:214730154..214732563-chr1:214752953..214754517,2	K562	blood:

Variant related genes	Relation type
ENSG00000152104	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10494981	1.00[CHB][hapmap]
rs17734395	1.00[CHB][hapmap]
rs17734456	1.00[CHB][hapmap]
rs17734758	1.00[CHB][hapmap]
rs17734879	1.00[CHB][hapmap]
rs17734993	1.00[CHB][hapmap]
rs17735632	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17735873	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17735908	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17791024	1.00[CHB][hapmap]
rs17792227	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17792294	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35329321	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4077549	1.00[CHB][hapmap]
rs59110162	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs60323172	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60569881	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6540846	1.00[CHB][hapmap]
rs6540847	1.00[CHB][hapmap]
rs6701105	1.00[CHB][hapmap]
rs6701315	1.00[CHB][hapmap]
rs73079780	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7550419	1.00[CHB][hapmap]
rs954414	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:214727200-214732400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr1:214727200-214732600	Weak transcription	Fetal Kidney	kidney
3	chr1:214730200-214733400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr1:214730800-214732800	Enhancers	HSMM	muscle
5	chr1:214731000-214732800	Enhancers	NH-A	brain
6	chr1:214731000-214732800	Enhancers	NHLF	lung
7	chr1:214731000-214732800	Enhancers	Osteobl	bone
8	chr1:214731200-214732400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr1:214731200-214732600	Enhancers	Hela-S3	cervix
10	chr1:214731200-214732800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr1:214731200-214733000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr1:214731200-214733000	Enhancers	NHDF-Ad	bronchial
13	chr1:214731800-214732800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr1:214731800-214732800	Enhancers	A549	lung
15	chr1:214731800-214733000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr1:214731800-214733000	Enhancers	Muscle Satellite Cultured Cells	--
17	chr1:214731800-214735000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr1:214732000-214733000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr1:214732000-214737200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr1:214732000-214739400	Weak transcription	NHEK	skin
21	chr1:214732000-214739800	Weak transcription	HMEC	breast
22	chr1:214732000-214740200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr1:214732200-214733800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr1:214732200-214736000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr1:214732200-214738600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr1:214732200-214739000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr1:214732200-214739000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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