Variant report

Variant	rs17735908
Chromosome Location	chr1:214748651-214748652
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:214721216..214723356-chr1:214748283..214749976,2	MCF-7	breast:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10494981	1.00[CHB][hapmap]
rs11120364	0.82[CEU][hapmap]
rs17734395	1.00[CHB][hapmap]
rs17734456	1.00[CHB][hapmap]
rs17734758	1.00[CHB][hapmap]
rs17734879	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs17734993	1.00[CHB][hapmap]
rs17735632	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17735873	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17791024	1.00[CHB][hapmap]
rs17792227	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17792294	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17792674	1.00[CEU][hapmap];0.87[YRI][hapmap];0.83[AFR][1000 genomes]
rs2362215	1.00[CEU][hapmap]
rs35329321	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4077549	1.00[CHB][hapmap]
rs59110162	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60323172	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs60569881	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6540846	1.00[CHB][hapmap]
rs6540847	1.00[CHB][hapmap]
rs6675792	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6701105	1.00[CHB][hapmap]
rs6701315	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs73079780	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7522082	0.82[CEU][hapmap]
rs7529892	0.85[YRI][hapmap]
rs7550419	1.00[CHB][hapmap]
rs954414	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:214747000-214748800	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr1:214747000-214748800	Enhancers	Hela-S3	cervix
3	chr1:214747800-214749400	Weak transcription	Colon Smooth Muscle	Colon
4	chr1:214748000-214748800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr1:214748000-214749200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr1:214748200-214749400	Enhancers	HMEC	breast
7	chr1:214748400-214748800	Enhancers	Placenta	Placenta
8	chr1:214748600-214749200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr1:214748600-214749200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr1:214748600-214749200	Enhancers	NHEK	skin
11	chr1:214748600-214754800	Weak transcription	Skeletal Muscle Female	skeletal muscle

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