Variant report

Variant	rs7522082
Chromosome Location	chr1:214739822-214739823
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:214738422..214740477-chr1:214743823..214746810,2	K562	blood:
2	chr1:214724629..214727609-chr1:214739313..214741160,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000152104	Chromatin interaction

rs_ID	r²[population]
rs10864111	0.94[ASN][1000 genomes]
rs11120354	0.95[ASN][1000 genomes]
rs11120355	0.93[CHB][hapmap];0.87[JPT][hapmap];0.95[ASN][1000 genomes]
rs11120356	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs12408289	0.93[ASN][1000 genomes]
rs12409422	0.93[ASN][1000 genomes]
rs1511049	0.82[CEU][hapmap]
rs1511050	0.85[CEU][hapmap]
rs17792674	0.82[CEU][hapmap]
rs2666834	0.82[CEU][hapmap]
rs2666848	0.81[JPT][hapmap]
rs2807652	0.81[JPT][hapmap]
rs2807653	0.81[JPT][hapmap]
rs2807654	0.81[JPT][hapmap]
rs2807655	0.81[JPT][hapmap]
rs2809588	0.82[CEU][hapmap]
rs4472736	0.81[JPT][hapmap]
rs6540851	0.81[JPT][hapmap]
rs6540852	0.81[JPT][hapmap]
rs7523691	0.87[CHB][hapmap];0.82[ASN][1000 genomes]
rs998452	0.85[CEU][hapmap]

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:214732000-214740200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr1:214737200-214744800	Enhancers	NHDF-Ad	bronchial
3	chr1:214738400-214744400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr1:214738600-214742600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr1:214738600-214745600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr1:214738800-214744400	Enhancers	HSMM	muscle
7	chr1:214739000-214744800	Enhancers	NHLF	lung
8	chr1:214739200-214740000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
9	chr1:214739200-214743000	Enhancers	NH-A	brain
10	chr1:214739200-214743400	Enhancers	Osteobl	bone
11	chr1:214739200-214744600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr1:214739200-214748600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr1:214739400-214740400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr1:214739400-214740600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr1:214739400-214741200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr1:214739400-214741400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr1:214739400-214745200	Weak transcription	Fetal Brain Male	brain
18	chr1:214739400-214746800	Enhancers	NHEK	skin
19	chr1:214739600-214740800	Flanking Active TSS	A549	lung
20	chr1:214739600-214744400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr1:214739600-214746800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr1:214739800-214745000	Enhancers	HUVEC	blood vessel
23	chr1:214739800-214746600	Enhancers	HMEC	breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links