Variant report

Variant	rs10864111
Chromosome Location	chr1:214742612-214742613
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10494984	1.00[CEU][hapmap]
rs11120354	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11120355	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.93[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11120356	0.81[CHB][hapmap];0.86[JPT][hapmap]
rs12058704	0.92[MEX][hapmap]
rs12097854	0.92[MEX][hapmap]
rs12404854	0.81[EUR][1000 genomes]
rs12405890	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs12408289	0.92[AFR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12409422	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12410075	0.84[EUR][1000 genomes]
rs12564450	0.88[GIH][hapmap]
rs17023284	0.84[EUR][1000 genomes]
rs17023338	0.92[MEX][hapmap]
rs17023380	0.92[MEX][hapmap]
rs17023384	0.92[MEX][hapmap]
rs2011467	0.83[ASN][1000 genomes]
rs2292377	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs2292378	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs2292379	0.84[EUR][1000 genomes]
rs2666838	0.82[ASN][1000 genomes]
rs2666844	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs2666848	0.82[CHB][hapmap];0.97[CHD][hapmap];0.87[JPT][hapmap];0.86[MEX][hapmap]
rs2807652	0.82[CHB][hapmap];0.97[CHD][hapmap];0.87[JPT][hapmap];0.86[MEX][hapmap]
rs2807653	0.82[CHB][hapmap];0.97[CHD][hapmap];0.87[JPT][hapmap];0.86[MEX][hapmap]
rs2807654	0.82[CHB][hapmap];0.87[JPT][hapmap]
rs2807655	0.82[CHB][hapmap];0.87[JPT][hapmap]
rs34157392	0.89[AFR][1000 genomes]
rs3748695	0.92[MEX][hapmap]
rs3748698	0.92[MEX][hapmap]
rs3790648	0.92[MEX][hapmap]
rs3790649	0.92[MEX][hapmap]
rs3795514	1.00[CEU][hapmap];0.92[MEX][hapmap]
rs3795516	0.92[MEX][hapmap]
rs41303281	0.84[EUR][1000 genomes]
rs4472736	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs59918378	0.84[EUR][1000 genomes]
rs6540851	0.82[CHB][hapmap];0.87[JPT][hapmap]
rs6540852	0.82[CHB][hapmap];0.97[CHD][hapmap];0.87[JPT][hapmap];0.86[MEX][hapmap]
rs6669573	0.84[EUR][1000 genomes]
rs7522082	0.93[CHB][hapmap];0.81[JPT][hapmap];0.94[ASN][1000 genomes]
rs7523691	0.93[CHB][hapmap];1.00[CHD][hapmap];0.81[JPT][hapmap];0.86[MEX][hapmap];0.86[ASN][1000 genomes]
rs907217	0.83[ASN][1000 genomes]

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:214737200-214744800	Enhancers	NHDF-Ad	bronchial
2	chr1:214738400-214744400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr1:214738600-214745600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr1:214738800-214744400	Enhancers	HSMM	muscle
5	chr1:214739000-214744800	Enhancers	NHLF	lung
6	chr1:214739200-214743000	Enhancers	NH-A	brain
7	chr1:214739200-214743400	Enhancers	Osteobl	bone
8	chr1:214739200-214744600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr1:214739200-214748600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr1:214739400-214745200	Weak transcription	Fetal Brain Male	brain
11	chr1:214739400-214746800	Enhancers	NHEK	skin
12	chr1:214739600-214744400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr1:214739600-214746800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr1:214739800-214745000	Enhancers	HUVEC	blood vessel
15	chr1:214739800-214746600	Enhancers	HMEC	breast
16	chr1:214740000-214744600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr1:214740200-214746600	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr1:214740400-214744800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr1:214740600-214744800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr1:214740800-214747000	Weak transcription	HSMMtube	muscle
21	chr1:214741200-214743400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr1:214741200-214744600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr1:214741400-214742800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr1:214742000-214747000	Weak transcription	Stomach Mucosa	stomach
25	chr1:214742000-214747000	Weak transcription	Hela-S3	cervix
26	chr1:214742400-214742800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
27	chr1:214742400-214742800	Enhancers	Right Atrium	heart
28	chr1:214742600-214742800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr1:214742600-214742800	Enhancers	Aorta	Aorta
30	chr1:214742600-214742800	Enhancers	Left Ventricle	heart
31	chr1:214742600-214742800	Enhancers	Ovary	ovary
32	chr1:214742600-214743000	Flanking Active TSS	A549	lung

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