Variant report

Variant	rs2666838
Chromosome Location	chr1:214746812-214746813
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10864111	0.82[ASN][1000 genomes]
rs10864112	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11120354	0.83[ASN][1000 genomes]
rs11120355	0.93[CHB][hapmap];0.93[JPT][hapmap];0.83[ASN][1000 genomes]
rs11120356	0.89[CEU][hapmap];0.88[CHB][hapmap];0.87[JPT][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11120357	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11120358	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11120359	0.82[ASN][1000 genomes]
rs11120360	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12408289	0.81[ASN][1000 genomes]
rs12409422	0.81[ASN][1000 genomes]
rs1877148	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1877149	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1877150	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2011467	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2666843	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2666844	0.89[CEU][hapmap];0.88[CHB][hapmap];0.83[JPT][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2666845	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2666846	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2666847	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2666848	0.91[CEU][hapmap];0.88[CHB][hapmap];0.87[JPT][hapmap];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2666849	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2666850	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2666852	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2807647	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2807648	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2807649	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2807652	0.91[CEU][hapmap];0.88[CHB][hapmap];0.87[JPT][hapmap];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2807653	0.91[CEU][hapmap];0.88[CHB][hapmap];0.87[JPT][hapmap];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2807654	0.91[CEU][hapmap];0.88[CHB][hapmap];0.87[JPT][hapmap];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2807655	0.91[CEU][hapmap];0.88[CHB][hapmap];0.87[JPT][hapmap];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34157392	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34961826	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4370741	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4472736	0.91[CEU][hapmap];0.88[CHB][hapmap];0.87[JPT][hapmap];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61820734	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6540850	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6540851	0.83[CEU][hapmap];0.88[CHB][hapmap];0.88[JPT][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6540852	0.91[CEU][hapmap];0.88[CHB][hapmap];0.87[JPT][hapmap];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7522082	0.87[CHB][hapmap];0.81[JPT][hapmap]
rs7523691	0.91[CEU][hapmap];0.87[CHB][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7535358	0.81[ASN][1000 genomes]
rs907217	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:214739200-214748600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr1:214740800-214747000	Weak transcription	HSMMtube	muscle
3	chr1:214742000-214747000	Weak transcription	Stomach Mucosa	stomach
4	chr1:214742000-214747000	Weak transcription	Hela-S3	cervix
5	chr1:214744400-214747200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr1:214744600-214747000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr1:214745400-214747000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr1:214745400-214747200	Enhancers	HUVEC	blood vessel
9	chr1:214745600-214747000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr1:214746200-214748600	Enhancers	Muscle Satellite Cultured Cells	--
11	chr1:214746400-214747400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr1:214746400-214747600	Enhancers	HSMM	muscle
13	chr1:214746600-214747000	Active TSS	Breast Myoepithelial Primary Cells	Breast
14	chr1:214746600-214747000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr1:214746600-214747400	Enhancers	Placenta	Placenta
16	chr1:214746600-214747800	Enhancers	Colon Smooth Muscle	Colon
17	chr1:214746600-214748200	Flanking Active TSS	HMEC	breast
18	chr1:214746600-214748400	Enhancers	Placenta Amnion	Placenta Amnion
19	chr1:214746800-214747000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr1:214746800-214747000	Active TSS	Skeletal Muscle Female	skeletal muscle
21	chr1:214746800-214747200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr1:214746800-214747200	Enhancers	NH-A	brain
23	chr1:214746800-214747400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr1:214746800-214747600	Enhancers	Sigmoid Colon	Sigmoid Colon
25	chr1:214746800-214747800	Enhancers	Skeletal Muscle Male	skeletal muscle
26	chr1:214746800-214748000	Flanking Active TSS	NHEK	skin

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